Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A17
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 8e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.013
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 30 0.50
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 29 0.66
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect(2) = 8e-04
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 556 PPPPPPPXXXKKKKKK 509
PPPPPPP KK+K K
Sbjct: 24 PPPPPPPGYVKKRKNK 39
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 559 PPPPPPPPXXXKKKKKKGXXGG 494
PPPPPPP K+K K G
Sbjct: 24 PPPPPPPGYVKKRKNKTPAQSG 45
Score = 26.6 bits (56), Expect(2) = 8e-04
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Frame = -2
Query: 560 PP--PPPPPPXXXXKKKK 513
PP PPPPPP KK+K
Sbjct: 20 PPSQPPPPPPPGYVKKRK 37
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.013
Identities = 20/59 (33%), Positives = 21/59 (35%)
Frame = -2
Query: 713 PPPPPPXXXXXXXXXXXLXXXXXXXXXXGEKXXPXPXGGGGGGXXXFFXXXPPPPPPPP 537
PPPPPP + G P P G G G PPPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG-------PPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 792 PPXXXXGGXXXGXXTTPXXXXGGXXXPPPPPPP 694
PP GG P G PPPPPPP
Sbjct: 753 PPAPIMGGPPP--PPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 29.9 bits (64), Expect = 0.50
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 559 PPPPPPPPXXXKKK 518
PPPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 557 PPPPPPPXXXXKKK 516
PPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 559 PPPPPPPPXXXKKKKKKGXXGGXXXFFF 476
PPPPPPPP K G F+
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKPYLFY 397
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 729 GGXXXPPPPPPP 694
GG PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 559 PPPPPPPP 536
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 560 PPPPPPPP 537
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 8.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 587 GXXXFFXXXPPPPPP 543
G F PPPPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953
Score = 21.0 bits (42), Expect(2) = 8.9
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 713 PPPPPP 696
PPPPPP
Sbjct: 907 PPPPPP 912
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,473
Number of Sequences: 5004
Number of extensions: 20614
Number of successful extensions: 385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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