Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A15
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   4.8  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.4  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   8.4  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 728 KAPRFPKGEKADRYPVSGRVGTGERTRELPGGNAW 624
           +AP+F   E  D Y V G V +   TRE   GN +
Sbjct: 192 RAPKFEAPE-VDNYVVMGIVASNSGTRETVNGNKY 225


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 562 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 690
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = +3

Query: 567 SQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLFSLREAWRFLIAHAV 746
           + K  L   ++  DR   +  VSP  +  +LS    A      R+ SL  AW+   + ++
Sbjct: 134 NSKPNLTKTISLNDRPRSLAWVSPTMILVSLSNDFCAVNTETSRISSLNLAWQ--QSSSL 191

Query: 747 GISVRCRSFAPKLGCVHETPVQPDRCALS 833
           G+ +     + K   +H T +  D   LS
Sbjct: 192 GLGISYIGMSIKSNKLHITRISDDEVLLS 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,432
Number of Sequences: 5004
Number of extensions: 68046
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)