Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A13
         (1000 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    31   0.97 
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    31   0.97 
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    29   6.8  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    28   9.1  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    28   9.1  

>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein
           34 protein.
          Length = 299

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 75  PPGPXASRGXLVSKGVTRRXQTPNRPQTXLPGGPVWAPVSKGRXG 209
           PPGP    G   S G+  +   P  P    P GP  AP + G  G
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPG 202


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular
           collagen RAM-4 protein.
          Length = 299

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 75  PPGPXASRGXLVSKGVTRRXQTPNRPQTXLPGGPVWAPVSKGRXG 209
           PPGP    G   S G+  +   P  P    P GP  AP + G  G
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPPGPPGAPGAPGTPG 202


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 75  PPGPXASRGXLVSKGVTRRXQTPNRPQTXLPGGPVWAP 188
           PPGP    G   S G+  +   P  P    P GP  AP
Sbjct: 158 PPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPKGPPGAP 195


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +3

Query: 75  PPGPXASRGXLVSKGVTRRXQTPNRPQTXLPGGPVWAPVSKGRXG 209
           PPGP    G     G + +   P  P    P GP  AP   G  G
Sbjct: 166 PPGPKGLPGPQGDAGTSGQDGVPGLPGPPGPSGPQGAPGVPGEKG 210


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 75  PPGPXASRGXLVSKGVTRRXQTPNRPQTXLPGGPVWAPVSKGRXG 209
           PPGP   +G   + G   R   P RP +    GPV    + G  G
Sbjct: 141 PPGPPGPQGPTGNSGQPGRPGNPGRPGSPGTPGPVGPNGASGDSG 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,030,719
Number of Sequences: 27780
Number of extensions: 166612
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)