Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A10
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.53 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 420 GGXXPPPPPXXPXGGXPPP 364
           GG  PPPPP    G  PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +3

Query: 339 PPPPXXXFXGGGXPPXGXXGGGGGXXPPXNPP 434
           P PP     GG  PP    G  G   PP  PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 423 GGGXXPPPPPXXPXGGXPPP 364
           GG   PPPPP     G PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 486 PPXGGXPPPXGGXXKKXXGGXGGGXXPPPPPXXPXGG 376
           P  GG PPP          G G    PPPPP    GG
Sbjct: 756 PIMGGPPPPP---PPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 600 GGXXPPPXKKKXXXGXPPPPFXXPP 674
           GG  PPP         PPPP   PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 339 PPPPXXXFXGGGXPPXGXXGGGGGXXPPXNPP 434
           PPPP       G PP G         PP  PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   K     PPPP    P  H+
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHM 233



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHM 246



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHM 259



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHM 272



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHM 285



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHM 298



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHM 311



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHM 324



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 PPPXKKKXXXGXPPPPFXXPPXNHL 686
           PPP   +     PPPP    P  H+
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHM 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,415
Number of Sequences: 5004
Number of extensions: 25260
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)