Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A08
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 28 1.6
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.9
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 4.9
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 26 6.5
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.5
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 6.5
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 6.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 6.5
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.5
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 26 8.6
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 28.3 bits (60), Expect = 1.6
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +1
Query: 688 PIPFDDSQGSPLMNFDDLFAKT 753
P+P ++++G+ ++FDDL AK+
Sbjct: 189 PLPEEEAEGAEFVSFDDLLAKS 210
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 382 VLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKHDAFVALAKDSKDVDE 561
V AS+ + + + EL+ S N +++ + ++ P G HD + LA+ D++E
Sbjct: 168 VFQASMGDAISTNDELESWSNNLLLSMLDQK----NITVPIGASHDDLIVLARRYYDIEE 223
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 358 VLPVVFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKH 516
+L V L LS SL + +D+ISFN +++ +AS + GDKH
Sbjct: 59 ILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDAS------GYQIGDKH 105
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 592 YGEKDNEVLAKKYGATK 642
YGE DN L +KYG TK
Sbjct: 294 YGELDNSELFRKYGFTK 310
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 406 YSQEKLIVQPKIQPGERNYEALFSMNTII 320
Y Q + +P + P NY FS+ T+I
Sbjct: 386 YKQSLINQKPSLNPSITNYRRFFSVGTVI 414
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 660 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 481
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 120 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 173
Query: 480 Y*RSF--KFVYY 451
+F FV Y
Sbjct: 174 LRTNFYRLFVIY 185
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 660 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 481
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 120 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 173
Query: 480 Y*RSF--KFVYY 451
+F FV Y
Sbjct: 174 LRTNFYRLFVIY 185
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 660 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 481
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 92 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 145
Query: 480 Y*RSF--KFVYY 451
+F FV Y
Sbjct: 146 LRTNFYRLFVIY 157
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 761 VSKLPGCVRSLDKLAINYESKGETEES 841
+SKLPG +R + +LA + ++ G + S
Sbjct: 824 ISKLPGLLREIGRLAASIQAPGSHDAS 850
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 660 HYRKIIFGSSVLLCQYLVIFFTVILHADFSYQKFIHVFRVLRECNKSIVFISIWKCNVEF 481
H+ KIIF + ++C Y+ +F + + Q+ I + EC K F S+++ ++F
Sbjct: 120 HFSKIIFPAQKVICLYIFLF-----ALNQTLQECIEEYVFSSECIKYRQFYSVYEI-IDF 173
Query: 480 Y*RSF--KFVYY 451
+F FV Y
Sbjct: 174 LRTNFYRLFVIY 185
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 195 WNYVLIWNYIIQSELSKLT 139
WNYV++W I +E + LT
Sbjct: 125 WNYVIVWLTNIAAEYTSLT 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,042
Number of Sequences: 5004
Number of extensions: 65268
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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