Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A07
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 30 0.51
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.51
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 28 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 2.1
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 28 2.1
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 2.7
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 4.8
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 27 4.8
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 27 4.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 4.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 8.3
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 26 8.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 8.3
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 323 DFYKKNIELSNDNSSDVTGSWSSFATRSTLLKDPLALLNDVDKYIKT 463
DFY N+E+ +N S G ++F + +++L+ L L ND K I T
Sbjct: 5 DFYGSNVEVLLNNDSKARGVITNFDSSNSILQ--LRLANDSTKSIVT 49
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 446 DKYIKTPGNDS-LSKCN--SLENFLDVSDLYDFKTMKSERPIIMNDEHKRKIASSLSYVE 616
D ++ GN S LS+ SLEN+LD + +FK M+ + + D K+ + L ++
Sbjct: 1270 DNFVFNAGNFSELSRLTVLSLENYLDAFNQVNFKKMELDNRLTTTDAEFTKVVADLEKLQ 1329
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 128 LLTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRAR 259
+L+ P + + + E D+ S TKETFF +++ AR
Sbjct: 153 ILSDPVRRRQFDSVDENADVEPPESTTKETFFELWTPVFESEAR 196
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 2.1
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Frame = +2
Query: 59 YETVLSALCSVISXELRVRGILALLTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSK 238
Y + A +V S G LAL ++K + T KP + E ++ + +
Sbjct: 422 YVSENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPPVPENKAEDSVVLKSSVPE 481
Query: 239 PKPKR--ARRPIEPYVVKEPQIXKLVIHPEDFYKKNIELSNDNSSDVTGSWSSFATRSTL 412
K + A +P + E I PE+ + ++ L + D S S ++S++
Sbjct: 482 DKSENSIASKPSATEGIPENAIALQSSVPENKAEDSVVLKSSVPED--KSEDSVPSKSSV 539
Query: 413 LKDPLALLNDVDKYIKTPGNDSLSKCNSLENF 508
L+D ++DK +DSL N E +
Sbjct: 540 LEDKHENSVEIDK----KADDSLPSNNKTEGY 567
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 422 PLALLNDVDKYIKTPGNDSLSKCNSLENFLDV 517
PL L D D+ I PG SLS SLE +D+
Sbjct: 212 PLNLREDADRRITVPGLTSLSP-ESLEEIIDI 242
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 425 LALLNDVDKYIKTPGND----SLSKCNSLE-NFLDVSDLYDFKT-MKSERPIIMNDEHKR 586
L + +VD Y+K P ND S+ N + F +V+ D+++ ++S+R + E K
Sbjct: 394 LMVRTEVDGYVKNPANDVQYISIKALNEYDPKFTNVTGSVDWRSKLESQRGAVFATEMKN 453
Query: 587 KIASSLSYVEWT 622
+S WT
Sbjct: 454 ---NSCKLARWT 462
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 644 LRLVPSKLSTQRKTEMMQSFFYAHH 570
+R + +K+ T R+ ++ Q F+Y HH
Sbjct: 643 IRKLCNKIQTVRQLQLPQPFYYEHH 667
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 361 IIITKFNVFLIEVLRMYYKLXDLGLFNNVGLYRSPCSLRFWF*KYIK 221
+++T F LI +YYKL G N V Y P S + Y+K
Sbjct: 170 VVVTSFERDLIPFHELYYKLALEGKCNYVIRYSPPSSSKLNSKLYVK 216
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 500 ENFLDVSDLYDFKTMKSERPIIMNDEHKRKIA 595
E FL + D Y K M+ E+P D KIA
Sbjct: 94 ETFLSICDDYGLKPMQDEKPKTEADTRTLKIA 125
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 656 VSFHLRLVPSKLSTQRKTEMMQSFFYAH 573
++FHL V +S Q+ +E+M F H
Sbjct: 271 INFHLSSVEKSISQQKASELMYKLFSEH 298
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 552 SDFIVLKSYKSDTSRKFSKELHLLNESF 469
+DFI LK DTS +K+ +N+SF
Sbjct: 16 TDFIPLKDNPKDTSSYINKKNPFVNDSF 43
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 332 KKNIELSNDNSSDVTGSWSSFATRSTLLKD 421
+ NI + + + + G W S + TLLKD
Sbjct: 211 RANILIQSQSFLGIRGVWGSLCAKGTLLKD 240
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +2
Query: 308 VIHPEDFYKKNIELSNDNSSDVTGSW----SSFAT 400
VI DF K+++ +ND+ SD GS+ SSF T
Sbjct: 21 VISQSDFLGKSLKNNNDDYSDFRGSYLNDKSSFQT 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,097
Number of Sequences: 5004
Number of extensions: 58952
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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