Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A07
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     31   1.2  
01_06_1502 + 37807954-37808050,37808161-37808378,37808482-378090...    30   2.9  
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    29   6.6  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     29   6.6  
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011...    28   8.7  

>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
 Frame = +2

Query: 140 PKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKEPQIXKLVIHP 319
           PKK    S + +K    E   Q ++   N F K     +R P E  +V    + +  +HP
Sbjct: 3   PKKHASGSEKRKKKRRIEDLIQLQKGAINKFFKSNTSTSRNPDEWAIV---AVEEQTMHP 59

Query: 320 EDF--YKKNIELSND--NSSDVTGSWSSFATRSTLLKD 421
           ED    + N+ ++ D  N SD    ++S  T ST + D
Sbjct: 60  EDQGPIEDNVGINTDDNNVSDHEPIFNSPTTESTRVDD 97


>01_06_1502 +
           37807954-37808050,37808161-37808378,37808482-37809011,
           37809107-37809875
          Length = 537

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 249 FGFGFENILKNVSFV*DEVSFKSGFSVCVEASLLFLGV 136
           FG+G  N    +S+V D VS   GF+VC+  + ++L +
Sbjct: 199 FGYGISNTA--LSYVEDSVSCTVGFAVCLATTAVYLPI 234


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 431 LLNDVDKYIKTPGNDSLSKCNSLEN-FLDVSDLYDFKTMKSERPIIMNDEHK 583
           L+  VDK +K   +    K   +E+ FL    L D+K +  E P+ MND  K
Sbjct: 90  LVGSVDKILK---HGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHSK 138


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +2

Query: 326 FYKKNIELSNDNSSDVTGSWSSFATRSTLLKDPLALLNDVDKYIKTPGNDSLSKCNSLEN 505
           F  K  E+ +D S+D    W+   T   +   P    + + KY K          N+  +
Sbjct: 13  FLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKH---------NNFSS 63

Query: 506 FLDVSDLYDFKTM 544
           F+   + YDFKT+
Sbjct: 64  FVRQLNTYDFKTV 76


>07_03_1091 +
           23899825-23900649,23900750-23900998,23901104-23901195,
           23901413-23902193
          Length = 648

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 137 TPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKEPQ 295
           +P KS   ST T+  D  E+  +  E  FN+ SK    +  R      V  PQ
Sbjct: 277 SPSKSGPNSTITQNDDPMESVRRKAEKAFNVLSKRASAKMTRESSNCTVATPQ 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,280,452
Number of Sequences: 37544
Number of extensions: 365300
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)