Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A07
(894 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64037-1|CAA45408.1| 517|Homo sapiens RNA polymerase II associa... 33 1.8
AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat con... 32 3.2
AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat con... 32 3.2
AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat con... 32 3.2
AK000055-1|BAA90912.1| 545|Homo sapiens protein ( Homo sapiens ... 32 3.2
X64002-1|CAA45404.1| 517|Homo sapiens RAP74 protein. 30 9.9
CR456798-1|CAG33079.1| 517|Homo sapiens GTF2F1 protein. 30 9.9
BT007097-1|AAP35761.1| 517|Homo sapiens general transcription f... 30 9.9
BC013007-1|AAH13007.1| 517|Homo sapiens general transcription f... 30 9.9
BC000120-1|AAH00120.1| 517|Homo sapiens general transcription f... 30 9.9
>X64037-1|CAA45408.1| 517|Homo sapiens RNA polymerase II associated
protein RAP74 protein.
Length = 517
Score = 32.7 bits (71), Expect = 1.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP 265
K+ KD+S +++ + ++ S+ FF K PKR R+P
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSAFFMAKKKTPPKRERKP 376
>AL160037-1|CAH72024.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 131 LTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEP 274
L TP+K+ A + E + +SS T + + PKP A RP+ P
Sbjct: 1226 LGTPEKNTKAEPKAEAGSRSRSSSSTPTSPKPLLQSPKPSLAARPVIP 1273
>AL024509-3|CAI21665.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 131 LTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEP 274
L TP+K+ A + E + +SS T + + PKP A RP+ P
Sbjct: 1226 LGTPEKNTKAEPKAEAGSRSRSSSSTPTSPKPLLQSPKPSLAARPVIP 1273
>AL022170-1|CAI21583.1| 1371|Homo sapiens leucine rich repeat
containing 16 protein.
Length = 1371
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 131 LTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEP 274
L TP+K+ A + E + +SS T + + PKP A RP+ P
Sbjct: 1226 LGTPEKNTKAEPKAEAGSRSRSSSSTPTSPKPLLQSPKPSLAARPVIP 1273
>AK000055-1|BAA90912.1| 545|Homo sapiens protein ( Homo sapiens
cDNA FLJ20048 fis, clone COL00659. ).
Length = 545
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 131 LTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEP 274
L TP+K+ A + E + +SS T + + PKP A RP+ P
Sbjct: 400 LGTPEKNTKAEPKAEAGSRSRSSSSTPTSPKPLLQSPKPSLAARPVIP 447
>X64002-1|CAA45404.1| 517|Homo sapiens RAP74 protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP 265
K+ KD+S +++ + ++ S+ F K PKR R+P
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKP 376
>CR456798-1|CAG33079.1| 517|Homo sapiens GTF2F1 protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP 265
K+ KD+S +++ + ++ S+ F K PKR R+P
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKP 376
>BT007097-1|AAP35761.1| 517|Homo sapiens general transcription
factor IIF, polypeptide 1, 74kDa protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP 265
K+ KD+S +++ + ++ S+ F K PKR R+P
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKP 376
>BC013007-1|AAH13007.1| 517|Homo sapiens general transcription
factor IIF, polypeptide 1, 74kDa protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP 265
K+ KD+S +++ + ++ S+ F K PKR R+P
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKP 376
>BC000120-1|AAH00120.1| 517|Homo sapiens general transcription
factor IIF, polypeptide 1, 74kDa protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP 265
K+ KD+S +++ + ++ S+ F K PKR R+P
Sbjct: 336 KRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKP 376
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,696,402
Number of Sequences: 237096
Number of extensions: 1920446
Number of successful extensions: 8292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8287
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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