Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A07
(894 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060299-1|AAL25338.1| 483|Drosophila melanogaster GH14208p pro... 31 1.6
AE014296-2107|AAF49949.2| 483|Drosophila melanogaster CG5638-PA... 31 1.6
BT030114-1|ABN49253.1| 342|Drosophila melanogaster IP08073p pro... 30 3.7
AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma pi... 29 8.6
AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision rep... 29 8.6
AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB... 29 8.6
AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA... 29 8.6
>AY060299-1|AAL25338.1| 483|Drosophila melanogaster GH14208p
protein.
Length = 483
Score = 31.5 bits (68), Expect = 1.6
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 347 LSNDNSSDVTGSWSSFATRSTLLKDPLALLNDVDKYIKTPGNDSLSKCNSLENFLDVSDL 526
L+N + S TGS +S A S + + D DK++ + LS ++ +++ D
Sbjct: 33 LANSSHSHSTGSTTSTAGSSATESSAVNVGKDHDKHVNDSVSTGLSNYSNYPSYIHYRDK 92
Query: 527 YDFKTMKSERPIIMNDE 577
YD + P + E
Sbjct: 93 YDLSYIAKVNPFWLQFE 109
>AE014296-2107|AAF49949.2| 483|Drosophila melanogaster CG5638-PA
protein.
Length = 483
Score = 31.5 bits (68), Expect = 1.6
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 347 LSNDNSSDVTGSWSSFATRSTLLKDPLALLNDVDKYIKTPGNDSLSKCNSLENFLDVSDL 526
L+N + S TGS +S A S + + D DK++ + LS ++ +++ D
Sbjct: 33 LANSSHSHSTGSTTSTAGSSATESSAVNVGKDHDKHVNDSVSTGLSNYSNYPSYIHYRDK 92
Query: 527 YDFKTMKSERPIIMNDE 577
YD + P + E
Sbjct: 93 YDLSYIAKVNPFWLQFE 109
>BT030114-1|ABN49253.1| 342|Drosophila melanogaster IP08073p
protein.
Length = 342
Score = 30.3 bits (65), Expect = 3.7
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 131 LTTPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRP--IEP--YVVKEPQI 298
+ PK S + P + ET E PK P IEP + K+P++
Sbjct: 257 INDPKIHIPESKEPILPKIPETDHLINEDLIRKPQSPKIHIPETPKIIEPKIQIPKDPKM 316
Query: 299 XKLVIHPEDFYKKNIEL 349
KL I PED Y K+I +
Sbjct: 317 PKL-IRPEDLYPKDINI 332
>AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 281 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 330
>AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision repair
protein ERCC2/XPD protein.
Length = 745
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 341 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 390
>AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB,
isoform B protein.
Length = 745
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 341 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 390
>AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA,
isoform A protein.
Length = 769
Score = 29.1 bits (62), Expect = 8.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 171 VCVEASLLFLGVVRSASMPRTLSSXDMTEHRAESTVS*FD---NPYVKGF 31
+C+E L R +S+ RTL D+TE+ A + ++ F + Y KGF
Sbjct: 365 ICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGF 414
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,162,616
Number of Sequences: 53049
Number of extensions: 634683
Number of successful extensions: 2066
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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