Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A07
(894 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog (t... 32 0.48
U10438-8|AAU87835.1| 627|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 30 1.9
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 30 2.6
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 29 4.5
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 29 4.5
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 29 4.5
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 28 7.8
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF016443-10|AAC24276.4| 325|Caenorhabditis elegans Serpentine r... 28 7.8
>U00044-6|AAA50679.2| 670|Caenorhabditis elegans Bard homolog
(tumor suppressorgene bard1) protein 1 protein.
Length = 670
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 560 IIMNDEHKRKIASSLSYVEWTTCLVRXEDGNLPIHNAVLNXNIKMLK 700
+++N +I S VE TC+ EDG P++ AV N +++ +K
Sbjct: 319 VLVNSIRNNRIPQLRSAVEAGTCVNEKEDGKTPLYVAVENSSLEAVK 365
>U10438-8|AAU87835.1| 627|Caenorhabditis elegans Hypothetical
protein B0280.2 protein.
Length = 627
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 152 KDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKEPQIXKLVIHPEDFY 331
K++ T E D N+ +T ++FF +KPK + +PI P + +P + +
Sbjct: 225 KESQTVKEVKDKNKDKVKTSKSFFGR-NKPKVEDVSQPIVPVITGDPLNPDWTVTAATSF 283
Query: 332 KKNIELSNDNSSD 370
K + S D D
Sbjct: 284 KHSHTFSADPIKD 296
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 227 IFSKPKPKRARRPIEPYVVKEPQIXKLVIHPEDFYKKNIELSNDNSSDVTGSWSSFATRS 406
IF++P P RP+ P + P ++ P + +I S +N S + SW+ A RS
Sbjct: 81 IFNQPPPVIQTRPVFPDFRQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRS 140
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +2
Query: 137 TPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKEPQIXKLVIH 316
T + T T P T +Q + F+ F P+ ++ P+EP + P L H
Sbjct: 468 TTNPDEHLQTVTTSPS---TKNQVSQQIFSSFPAPQVEQTGAPVEPEFPQFPTFPTLSPH 524
Query: 317 PED 325
P++
Sbjct: 525 PQE 527
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 193 NFISNEGNIF*YIFKTKTEESTETDR 270
NF+SN GN+ Y+ K +T + E DR
Sbjct: 250 NFLSNGGNVTDYMIKVETRLNQEDDR 275
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 193 NFISNEGNIF*YIFKTKTEESTETDR 270
NF+SN GN+ Y+ K +T + E DR
Sbjct: 250 NFLSNGGNVTDYMIKVETRLNQEDDR 275
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +2
Query: 137 TPKKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKEPQIXKLVIH 316
T + T T P T +Q + F+ F P+ ++ P+EP + P L H
Sbjct: 468 TTNPDEHLQTVTTSPS---TKNQVSQQIFSSFPAPQVEQTGAPVEPEFPQFPTFPTLSPH 524
Query: 317 PE 322
P+
Sbjct: 525 PQ 526
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 239 PKPKRARRPIEPYVVKEPQIXKLV 310
P P RA RPI P V+ PQ+ L+
Sbjct: 184 PPPTRAPRPIIPTEVRRPQMPSLI 207
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 152 KDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKEPQIXKLVIHPE--D 325
K++ T E D N+ ++K F +KPK + +PI P + +P ++P+
Sbjct: 231 KESQTVKEVKDKNKDKKKSKSFFGR--NKPKVEDVSQPIVPVITGDP------LNPDWTS 282
Query: 326 FYKKNIELSNDNSSDVTGSWSSFATRSTLLKDPL 427
++ S +SS VT + +SF T DP+
Sbjct: 283 NSTSSMSASFRSSSTVTAA-TSFKHSHTFAADPI 315
>AF016443-10|AAC24276.4| 325|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 9 protein.
Length = 325
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -1
Query: 252 LFGFGFENILKNVSFV*DE----VSFKSGFSVCVEASLLFLGVV 133
+F GF N + NV + D V++K+ SVC + ++L G++
Sbjct: 222 VFSIGFFNTIVNVCLILDNYDIPVTYKNIASVCCDYAILLYGII 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,602
Number of Sequences: 27780
Number of extensions: 332343
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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