Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A07
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   1.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.7  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 434 LNDVDKYIKTPGNDSLSK 487
           +N  D Y+KTP ++ L K
Sbjct: 231 INGFDPYVKTPNDEELEK 248


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 437 NDVDKYIKTPGNDSLSKCNSL 499
           N +DK+IKT  N+SL+    L
Sbjct: 276 NVIDKWIKTEDNESLNAARML 296


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 143 KKSKDASTQTEKPDLNETSSQTKETFFNIFSKPKPKRARRPIEPYVVKE 289
           K  K     T+ PD +   S  ++   +    PKP+   +P  PY V +
Sbjct: 221 KHVKSIRAVTKLPDTSMAKSFVRKV--HATKPPKPQTKTKPTSPYHVSD 267


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 71  LSALCSVISXELRVRGILALLTTPKKSKDASTQTEKPDLNETSS 202
           LSA+ S++   + +     LLT  K  K +S  + +PD   T S
Sbjct: 58  LSAMLSLVVVTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYS 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,066
Number of Sequences: 438
Number of extensions: 4131
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)