Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A05
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    36   0.006
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   1.2  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   2.1  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    27   3.7  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    27   3.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.7  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   3.7  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   4.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.5  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   6.5  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   6.5  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   8.6  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    26   8.6  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   8.6  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   8.6  

>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +3

Query: 351 SNRTICYN--NKIYQETSHNMAQRSITSFFKKTPFTPMEIKSNGGSKVSHVNGDTSPISD 524
           ++RT+ Y+  +++ +  S  + + S+T   KKT  +  E K  G S  S  + ++   SD
Sbjct: 498 THRTLSYSRLSELSKTFSPEIREPSLT---KKTAVSMQESKEEGRSDESSESEESGSSSD 554

Query: 525 EKDKPSERQQSNSIDNDGDSQDSLKPKNKAKRQR 626
           E D   +  +SN I  +  +   L  K K K +R
Sbjct: 555 ESDNSEKEDRSNPIPVEKRASTVLNTKKKRKAKR 588


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 456 MEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKRQR 626
           +E K    SK+   +G++S    EK +  +++   S     +S+D   PK K K ++
Sbjct: 451 IEKKKKKSSKLKEADGESS--KKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKK 505


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 489 SHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDS 593
           S  +G  S  SDE D  S   +S+S DND  S  S
Sbjct: 100 SEASGSGSS-SDESDSSSSESESSSEDNDSSSSSS 133


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 628 TRCRLALFFGFKESWESPSLSMLLDCCLSE 539
           T C +A+FFGF E    P+++ L+ C ++E
Sbjct: 99  TLCTIAMFFGFLE--VIPAIAYLIACYVAE 126


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 413 KEYHVILQENSIYTYGNKK*WWIQSK 490
           K    + + NS Y + +KK WWI S+
Sbjct: 207 KVVSTVAKYNSAYIHNSKKFWWIMSE 232


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 239 LDDTIQLVIVYWFQEKIDSNHY 174
           L D  QLV+ +W  E I  NHY
Sbjct: 486 LRDEAQLVLTHWADELIARNHY 507


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 712  FKVIESSLSERSSFFTLTGDSDSLLELITRCRLALFF 602
            + VI S ++ RSSF  L+ DSD  + ++      LFF
Sbjct: 969  YSVIPSRMTGRSSFTQLSDDSDETI-ILASATYGLFF 1004


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +3

Query: 351 SNRTICYNNKIYQETSHNMAQRSITSFFKKTPFTPMEIKSNGGSKVSHV-----NGDTSP 515
           S +TI  ++   ++   +  +       K     P   K  GGS    V     + D + 
Sbjct: 188 SKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAK 247

Query: 516 ISDEKDKPSERQQSNSIDNDGDSQDSLKP 602
            S  KD+PSE ++  S   D   +  +KP
Sbjct: 248 GSTSKDQPSEEEEKTSDIQDRKIKTPIKP 276


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 483 KVSHVNGDTSPISDEKDKPSERQQSNSI 566
           KV  V+G+TS  S E++KPS   +  S+
Sbjct: 383 KVEKVDGNTSSPSKEEEKPSTEPEKPSV 410


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 432 FKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLK 599
           F K P   +  +SN GS  +  +GD S    EK K S +  S    N G  Q   K
Sbjct: 379 FGKEPEGYLSNQSNNGSAQNKKSGDNS----EKTKNSLKSSSKKSANTGSGQGKTK 430


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 321 SYCLLYKQITSNRTICYNNKIYQETSHNMAQRSITSFFKKTPF 449
           S+  +Y   TSN T  Y  +IY     ++ +      F+  PF
Sbjct: 836 SFTFIYSDFTSNITNNYRPRIYYLAQFSVCENQSIMTFRLQPF 878


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/80 (18%), Positives = 33/80 (41%)
 Frame = +3

Query: 357 RTICYNNKIYQETSHNMAQRSITSFFKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKDK 536
           RTI  NN +  +  +      ++   K++ F   E  +N  + +   N   S + +  + 
Sbjct: 149 RTILVNNSVEPQMENTANITIVSPSLKESDFESEEKATNDNNGLIETN-HNSKLEESSEH 207

Query: 537 PSERQQSNSIDNDGDSQDSL 596
             E  + ++I+   DS   +
Sbjct: 208 EEEEDEESNIERTEDSDHQI 227


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/58 (24%), Positives = 33/58 (56%)
 Frame = +3

Query: 252 YCDYRDL*MNLTKSLFVNRLVKISYCLLYKQITSNRTICYNNKIYQETSHNMAQRSIT 425
           +C+Y    +  T  L    ++ ISY L++  ++  + +  NN++YQ+ +  +AQ +++
Sbjct: 58  HCEYGTKGITYTNHL--QFILTISY-LVHWDLSQVKPLVENNRLYQQRADALAQENLS 112


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 574  SLSMLLDCCLSEGLSFSSDMGDVSPFTWLTLD 479
            +++ L++C LS+  + S   GD +PFT +T++
Sbjct: 1011 TVAHLVECQLSKVSALSGFEGDATPFTDVTVE 1042


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 242 SLDDTIQLVIVYWFQEKIDSNHYNIMFWFSKKPDFTC*PIDYI 114
           SL++ I++ IV   Q+K       ++ W  KKP +   P D+I
Sbjct: 70  SLNEGIKMEIVSSLQQKDQKKRNKLIAWMRKKPCYEQ-PDDFI 111


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +3

Query: 348 TSNRTICYNNKIYQETSHNMAQRSITSFFKKTP--FTPMEIKSNGGSKVSHVNGDTSPIS 521
           T +RT+  ++  Y    H    RS++    KTP    P  +  +  + + H++      +
Sbjct: 241 TPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKTPRRIRPKSLSKSNSTPLKHLSAQKPNSN 300

Query: 522 DEKDKPSERQQSNSIDNDGDSQDSLK 599
                P+    SN+ +N   S   ++
Sbjct: 301 YYTGPPTPVSISNTPENIHPSSSEVR 326


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 429 FFKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKD 533
           +FK T   PM +    G +VSH+     P+ +++D
Sbjct: 24  YFKLTSNDPMILSGFRGPRVSHLTIGMIPVKNDED 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,409,081
Number of Sequences: 5004
Number of extensions: 70247
Number of successful extensions: 236
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)