Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A05
(917 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT004494-1|AAO42658.1| 1113|Drosophila melanogaster GH24302p pro... 33 0.72
AY166585-1|AAN86032.1| 990|Drosophila melanogaster HAMLET protein. 33 0.72
AE014134-2973|AAF53703.3| 1108|Drosophila melanogaster CG31753-P... 33 0.72
AE014134-92|AAN10495.1| 713|Drosophila melanogaster CG31921-PA ... 32 0.96
BT003261-1|AAO25018.1| 569|Drosophila melanogaster LD23656p pro... 31 1.7
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep... 31 1.7
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch... 31 1.7
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p... 31 1.7
AE013599-1893|AAF58247.1| 569|Drosophila melanogaster CG10105-P... 31 1.7
AE014298-2417|AAF48618.2| 639|Drosophila melanogaster CG9906-PA... 30 5.1
AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-P... 29 6.8
BT021418-1|AAX33566.1| 901|Drosophila melanogaster LD04461p pro... 29 8.9
AE014298-1652|AAF48069.1| 901|Drosophila melanogaster CG1703-PA... 29 8.9
>BT004494-1|AAO42658.1| 1113|Drosophila melanogaster GH24302p
protein.
Length = 1113
Score = 32.7 bits (71), Expect = 0.72
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 459 EIKSNGGSKVSHVNGDTSPISDEKDKPSERQ-QSNSIDNDGDSQDSLKPKNK 611
E KS + NG +S +S E K SE + ++NSI DGD + + +NK
Sbjct: 93 EKKSTLSKTQAESNGKSSSVSTESQKMSEEKVEANSIRKDGDLKTPKETENK 144
>AY166585-1|AAN86032.1| 990|Drosophila melanogaster HAMLET protein.
Length = 990
Score = 32.7 bits (71), Expect = 0.72
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 432 FKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNK 611
F +TP + N G + N D ++ EKD + S++I N+ S + +K
Sbjct: 925 FMNRVYTPNSLAGNEGDTEEYPNSDDQSVNLEKDSGNFNNNSSNISNNNSSSGNNNNSSK 984
Query: 612 A 614
A
Sbjct: 985 A 985
>AE014134-2973|AAF53703.3| 1108|Drosophila melanogaster CG31753-PA
protein.
Length = 1108
Score = 32.7 bits (71), Expect = 0.72
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 432 FKKTPFTPMEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNK 611
F +TP + N G + N D ++ EKD + S++I N+ S + +K
Sbjct: 1043 FMNRVYTPNSLAGNEGDTEEYPNSDDQSVNLEKDSGNFNNNSSNISNNNSSSGNNNNSSK 1102
Query: 612 A 614
A
Sbjct: 1103 A 1103
>AE014134-92|AAN10495.1| 713|Drosophila melanogaster CG31921-PA
protein.
Length = 713
Score = 32.3 bits (70), Expect = 0.96
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 465 KSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAK 617
K G K S GDT EKDK +++ +S DN+ + +D K K+K K
Sbjct: 368 KEKGRVKKSDDLGDT-----EKDKETDKSKSTGKDNEKNKEDKEKEKDKGK 413
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 465 KSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGD-SQDSLKPKNKAKRQR 626
KS K H N S EKDK ++ Q+N N D + LKPK+ K+ +
Sbjct: 443 KSTDEDKGKH-NAKDKDKSKEKDKNNDTNQNNKKKNIADPDHEQLKPKHPGKQPK 496
>BT003261-1|AAO25018.1| 569|Drosophila melanogaster LD23656p
protein.
Length = 569
Score = 31.5 bits (68), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 173 NIMFWFSKKPDFTC*PIDYILNIFVLTYRNISKILTCWM 57
N FW KKP T PID++ + +L R++ +L W+
Sbjct: 429 NAKFWPQKKPVST--PIDFVAHCEILERRHLKALLRIWL 465
>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
depedent uracil/thymineDNA glycosylase protein.
Length = 1738
Score = 31.5 bits (68), Expect = 1.7
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 336 YKQITSNRTI-CYNNKIYQETSHNMAQRSIT-SFFKKTPFTPMEIKSNGGSKVSHVNGDT 509
Y + SN T C + ++Y+ + + T S F PM K K+ VN DT
Sbjct: 668 YGILVSNDTPECLSREMYRHSQQSTTVLEQTDSSSCGINFKPMPKKRGRKKKLVAVNADT 727
Query: 510 SPISDEKDKPSERQQSNSID-NDGDSQDSLKPKNKAKRQR 626
S ++ D+ ++ + D DG + KPK + K R
Sbjct: 728 SQMTTPVDQ--QKVSAGRADCEDGGGDQAAKPKERKKHDR 765
>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
mismatch-specific thymineDNA glycosylase protein.
Length = 1095
Score = 31.5 bits (68), Expect = 1.7
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 336 YKQITSNRTI-CYNNKIYQETSHNMAQRSIT-SFFKKTPFTPMEIKSNGGSKVSHVNGDT 509
Y + SN T C + ++Y+ + + T S F PM K K+ VN DT
Sbjct: 25 YGILVSNDTPECLSREMYRHSQQSTTVLEQTDSSSCGINFKPMPKKRGRKKKLVAVNADT 84
Query: 510 SPISDEKDKPSERQQSNSID-NDGDSQDSLKPKNKAKRQR 626
S ++ D+ ++ + D DG + KPK + K R
Sbjct: 85 SQMTTPVDQ--QKVSAGRADCEDGGGDQAAKPKERKKHDR 122
>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
protein.
Length = 1738
Score = 31.5 bits (68), Expect = 1.7
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 336 YKQITSNRTI-CYNNKIYQETSHNMAQRSIT-SFFKKTPFTPMEIKSNGGSKVSHVNGDT 509
Y + SN T C + ++Y+ + + T S F PM K K+ VN DT
Sbjct: 668 YGILVSNDTPECLSREMYRHSQQSTTVLEQTDSSSCGINFKPMPKKRGRKKKLVAVNADT 727
Query: 510 SPISDEKDKPSERQQSNSID-NDGDSQDSLKPKNKAKRQR 626
S ++ D+ ++ + D DG + KPK + K R
Sbjct: 728 SQMTTPVDQ--QKVSAGRADCEDGGGDQAAKPKERKKHDR 765
>AE013599-1893|AAF58247.1| 569|Drosophila melanogaster CG10105-PA
protein.
Length = 569
Score = 31.5 bits (68), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 173 NIMFWFSKKPDFTC*PIDYILNIFVLTYRNISKILTCWM 57
N FW KKP T PID++ + +L R++ +L W+
Sbjct: 429 NAKFWPQKKPVST--PIDFVAHCEILERRHLKALLRIWL 465
>AE014298-2417|AAF48618.2| 639|Drosophila melanogaster CG9906-PA
protein.
Length = 639
Score = 29.9 bits (64), Expect = 5.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 501 GDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKRQR 626
GDT+ S ++ Q + +DN+ D +D+LK K ++R
Sbjct: 591 GDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKR 632
>AE014296-3057|AAN11668.1| 2133|Drosophila melanogaster CG14073-PB,
isoform B protein.
Length = 2133
Score = 29.5 bits (63), Expect = 6.8
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 450 TPMEIKSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQD 590
T ++ K+ S ++ GD +P + ++ S + DND D ++
Sbjct: 1191 TKIKKKTTDSSSLNKAKGDENPKQESQESTSSESDQDDNDNDNDEEE 1237
>BT021418-1|AAX33566.1| 901|Drosophila melanogaster LD04461p
protein.
Length = 901
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 519 SDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKR 620
SDE +KP + +N +D++ D + L K AK+
Sbjct: 93 SDEDEKPEKSLPANDLDDEDDDEAPLASKPAAKK 126
>AE014298-1652|AAF48069.1| 901|Drosophila melanogaster CG1703-PA
protein.
Length = 901
Score = 29.1 bits (62), Expect = 8.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 519 SDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKR 620
SDE +KP + +N +D++ D + L K AK+
Sbjct: 93 SDEDEKPEKSLPANDLDDEDDDEAPLASKPAAKK 126
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,632,490
Number of Sequences: 53049
Number of extensions: 693106
Number of successful extensions: 2326
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2317
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4505424660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -