Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A05
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    30   2.0  
AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical...    30   2.7  
AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog (hedg...    29   3.5  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   3.5  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    29   6.2  
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z70754-5|CAA94775.1|  304|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z71181-6|CAA94899.1|  647|Caenorhabditis elegans Hypothetical
           protein K07C5.6 protein.
          Length = 647

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 483 KVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDS-LKPKNKAKRQR 626
           KVS  +   SP SD+++K  ER++   I+ +   +D   + K + KR+R
Sbjct: 495 KVSEKSISPSPPSDDEEKEKEREKERLIEKERRERDQRRRDKKREKRER 543


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 369 YNNKIYQETSHNMAQRSITSFFKKTPFTPMEI 464
           Y+  +  ETS N+  +SI SFFKK     +EI
Sbjct: 188 YSRLVSNETSRNVFVKSIVSFFKKNDIDGIEI 219


>Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 SDEKDKPSERQQSNSIDNDGDSQDSLK 599
           ++E+D PS++  S + DND D  + LK
Sbjct: 354 TEERDNPSKKSDSENEDNDNDFNEKLK 380


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = +3

Query: 471 NGGSKVS--HVNGDT------SPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKRQR 626
           NG  K +  HVNGD       S    +KD+  + Q+ +++ N+  S D  +PK++A  ++
Sbjct: 161 NGNVKKANGHVNGDVQSSIGVSQKQQQKDEDEKTQKKDAVQNEKPSIDKKQPKSQAPTEK 220


>AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 SDEKDKPSERQQSNSIDNDGDSQDSLK 599
           ++E+D PS++  S + DND D  + LK
Sbjct: 354 TEERDNPSKKSDSENEDNDNDFNEKLK 380


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 477 GSKVSHVNGDTSPISDEKDKPSERQQSNSID-NDGD----SQDSLKPKNKAK 617
           GS VS+ +  T+  SDEKD+   ++    ID +DGD     Q +  PK K K
Sbjct: 152 GSGVSNSDTSTNGNSDEKDEEIAKEDDEGIDEDDGDEETPEQKTTIPKKKPK 203


>AF022975-10|AAB70668.2|  661|Caenorhabditis elegans Hypothetical
           protein K09C6.1 protein.
          Length = 661

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 357 RTICYNNKIYQETSHNMAQRSITSFFKKTPFT--PMEIKSNGGSKVSHVNGDTSPISDEK 530
           RT    N+   ET  +  +RS       T  T  PM   S+   +    N   S  ++ K
Sbjct: 363 RTSDEENEQKSETKKDSCERSSAEVSSSTEQTSAPMSEASSSDGRKKPKNAGKS--AERK 420

Query: 531 DKPSERQQSNSIDNDGDSQ 587
            KP+E+  S+  D+DG ++
Sbjct: 421 GKPAEKNPSSEKDDDGATE 439


>AF067209-1|AAC16982.2|  553|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 9 protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 583 ESPSLSMLLDCCLSEGLSFSSDMG 512
           + P   ++L CC  EGL FS D+G
Sbjct: 119 DHPRQPLVLQCCTFEGLRFSQDVG 142


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 411 QRSITSFFKKTPFTPM---EIKSNGGSKVSHVNGDTSPIS-DEKDKPSERQQSNSIDNDG 578
           Q S+ SFF KTP +     E+K     +   +  DT  IS D + K  +R  S ++    
Sbjct: 5   QSSLMSFFTKTPKSEKPEEEVKEKSVEEPKSLKNDTPKISNDSEKKVLKRSNSKTV---- 60

Query: 579 DSQDSLKPKNKAKRQR 626
            S     P+N +KR +
Sbjct: 61  -SSPVKTPRNASKRPK 75


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 465 KSNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAKRQR 626
           ++NGG+  S V   T   +++K  PSE Q S+++     +      K++ K+++
Sbjct: 385 EANGGAPESGVITATELGAEQKANPSESQGSSAVSTAASNASKKSKKDRKKKKK 438


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 495 VNGDTSPISDEKDKPSER-QQSNSIDNDGDSQDSLKPKNKAKRQR 626
           VN  +S   DE++KP +R ++S     D  S+D  + K+  KR +
Sbjct: 280 VNDSSSDDEDEEEKPEKRSKKSKKAVIDSSSEDEEEEKSSKKRSK 324


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 248 TRSLDDTIQLVIVYWFQEKID--SNHYNIMFWFSKKPDF 138
           T +L++TI+   +Y+F   +   S HY IMF+F  K  F
Sbjct: 184 TYNLNETIRWNSIYFFLSAVSLISIHYAIMFYFGLKMHF 222


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.7 protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +3

Query: 468 SNGGSKVSHVNGDTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAK 617
           S GG+ + H + D +   DE+D+     + ++ D+D D+++  +P+ + +
Sbjct: 185 SRGGAVLLHNDDDEN---DEEDQEDGENEEDADDDDDDTEEQQQPRERRR 231


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 426 SFFKKTPFTPMEIKSNGGSKVSHVNGDTSPIS---DEKDKPSERQQSNSIDNDGDSQDSL 596
           S F +T  T    +  GG++     G  +P      + D+  E+++S++I+N GD +   
Sbjct: 170 SRFARTLLTHWRTRGRGGARGRGGRGRGAPRQTRDQDGDEKDEKEKSDTIENSGDGETRG 229

Query: 597 KPKNK 611
           K + +
Sbjct: 230 KRRTR 234


>Z70754-5|CAA94775.1|  304|Caenorhabditis elegans Hypothetical
           protein F58E6.5 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 516 ISDEKDKPSERQQSNSIDNDGDSQDSLKPKNKAK 617
           ++D+K+  +++  +N  D D D Q  L+ K+K +
Sbjct: 125 VNDQKENETQQPTNNDDDEDKDRQGQLRSKSKVE 158


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 426 SFFKKTPFTPMEIKSNGGSKVSHVNGDTSPIS---DEKDKPSERQQSNSIDNDGDSQDSL 596
           S F +T  T    +  GG++     G  +P      + D+  E+++S++I+N GD +   
Sbjct: 170 SRFARTLLTHWRTRGRGGARGRGGRGRGAPRQTRDQDGDEKDEKEKSDTIENSGDGETRG 229

Query: 597 KPKNK 611
           K + +
Sbjct: 230 KRRTR 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,470,260
Number of Sequences: 27780
Number of extensions: 378916
Number of successful extensions: 1212
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)