Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A05
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 504 DTSPISDEKDKPSERQQSNSIDNDGDSQDSLKPKNK 611
           ++S   DE+     ++ S S++ DGD     K K+K
Sbjct: 106 NSSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHK 141


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 455 RCKWSFLEE*RDTPLSHVVT 396
           R  W +L++ + TPL  V T
Sbjct: 130 RINWEYLDKYKPTPLGAVAT 149


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 508 VSPFTWLTLDPPLLFISIGVNGVFL 434
           +SP + L +   L+F+ I +NGV++
Sbjct: 763 ISPRSQLIICSGLVFVQILINGVWM 787


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +3

Query: 372  NNKIYQETSHNMAQRSITSFFKKTPFTPMEIKSNGGSK 485
            N K+Y++  + + + S +SF+    +   E   N   K
Sbjct: 939  NKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCNPDQK 976


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,549
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)