Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A04
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...   117   3e-27
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   3.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   4.9  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   6.5  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   8.6  

>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score =  117 bits (281), Expect = 3e-27
 Identities = 51/67 (76%), Positives = 59/67 (88%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 495
           MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HVDLIEKLL
Sbjct: 1   MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60

Query: 496 NYSPLEK 516
            Y+PL K
Sbjct: 61  CYNPLSK 67


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 422 SKASPSV*SACSRPK*ASHLFPITFPHVKHRTGI 321
           S +SPS  S  S P    HL P+T PH     G+
Sbjct: 2   SSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGL 35


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 310 NKMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALD-----VLGLKRYCCRRMLLGHV 474
           NK +   +C     V+ N  +A  G+   +   GD L+     +LGL     RR LLG +
Sbjct: 178 NKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKI 237

Query: 475 DL 480
           D+
Sbjct: 238 DI 239


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 504 GIIQEFFNEIHVSEQHSSAAVSFQSKDIQSITFCVIR 394
           G+I E  NE+H+S+  SS   S   +D++ I F   R
Sbjct: 463 GLI-ESTNELHLSDSESSETSSSSEEDMEFIPFSARR 498


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 469 VRATFFCSSIFSIQGHPKHHLLCNPP 392
           + AT+    +   +G P     CNPP
Sbjct: 517 IMATYLADRVILFEGQPSRDARCNPP 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,646
Number of Sequences: 5004
Number of extensions: 50407
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)