Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A04
         (920 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37690-1|AAA91459.1|   67|Homo sapiens RNA polymerase II subunit...   141   3e-33
CR536565-1|CAG38802.1|   67|Homo sapiens POLR2L protein.              141   3e-33
BC018649-1|AAH18649.1|   67|Homo sapiens polymerase (RNA) II (DN...   141   3e-33
BC005903-1|AAH05903.1|   67|Homo sapiens polymerase (RNA) II (DN...   141   3e-33
Z47729-1|CAA87658.1|   32|Homo sapiens RNA polymerase II subunit...    73   1e-12
Z47728-1|CAA87657.1|   32|Homo sapiens RNA polymerase II subunit...    73   1e-12
DQ100803-1|AAZ08810.1|  119|Homo sapiens immunoglobulin heavy ch...    31   7.8  

>U37690-1|AAA91459.1|   67|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 67

 Score =  141 bits (342), Expect = 3e-33
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 495
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 496 NYSPLEK 516
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>CR536565-1|CAG38802.1|   67|Homo sapiens POLR2L protein.
          Length = 67

 Score =  141 bits (342), Expect = 3e-33
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 495
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 496 NYSPLEK 516
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>BC018649-1|AAH18649.1|   67|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide L, 7.6kDa protein.
          Length = 67

 Score =  141 bits (342), Expect = 3e-33
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 495
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 496 NYSPLEK 516
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>BC005903-1|AAH05903.1|   67|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide L, 7.6kDa protein.
          Length = 67

 Score =  141 bits (342), Expect = 3e-33
 Identities = 61/67 (91%), Positives = 65/67 (97%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 495
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEGDALD LGLKRYCCRRMLL HVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 496 NYSPLEK 516
           NY+PLEK
Sbjct: 61  NYAPLEK 67


>Z47729-1|CAA87658.1|   32|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 32

 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEG 411
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEG
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 32


>Z47728-1|CAA87657.1|   32|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 32

 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +1

Query: 316 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEG 411
           MIIPVRCFTCGK++GNKWEAYLGLLQA+YTEG
Sbjct: 1   MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 32


>DQ100803-1|AAZ08810.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 119

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 368 GKLT*ACYRRITQKVMLWMSLD*KDTAAEECCSDTWISLKN 490
           G +T +  + I+   + W SL   DTA   C  + W+ +KN
Sbjct: 65  GHVTISADKSISTAYLQWSSLKASDTAMYYCAREQWLGIKN 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,380,189
Number of Sequences: 237096
Number of extensions: 1844850
Number of successful extensions: 3016
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3002
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)