Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_A03
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect(2) = 3.4
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +2

Query: 401 KXPPXPXXXGFXFWXPXPFP-PXXXPXPXXSGGGXGXPPPXGG 526
           K PP P         P P P P   P P    GG   PPP  G
Sbjct: 730 KSPPPPPPAVIV---PTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 20.6 bits (41), Expect(2) = 3.4
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 596 PXP*XGPXGGXXPXXPPP 649
           P P  G  G   P  PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +2

Query: 446  PXPFPPXXXPXPXXSGGGXGXPPP 517
            P P P    P P  S G    PPP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPP 1065


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,493
Number of Sequences: 5004
Number of extensions: 10511
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)