Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A03
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.058
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.18
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.24
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.7
07_01_0479 + 3606663-3607448 30 2.9
01_01_0046 - 331758-332627 29 5.1
05_01_0141 - 937428-937717,938483-938705 29 6.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.5 bits (78), Expect = 0.058
Identities = 22/76 (28%), Positives = 24/76 (31%)
Frame = +2
Query: 446 PXPFPPXXXPXPXXSGGGXGXPPPXGGXXXXPXXRGXPXKKXFNXRXXXGPXP*XGPXGG 625
P P P P P PPP G P +G P P P G GG
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376
Query: 626 XXPXXPPPXXTXKKXP 673
P PPP + P
Sbjct: 377 --PPPPPPKGGASRPP 390
Score = 35.1 bits (77), Expect = 0.077
Identities = 26/92 (28%), Positives = 28/92 (30%)
Frame = +2
Query: 446 PXPFPPXXXPXPXXSGGGXGXPPPXGGXXXXPXXRGXPXKKXFNXRXXXGPXP*XGPXGG 625
P P PP P P + PPP P +G P GP P P G
Sbjct: 311 PAPPPP---PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAK-----GPPPPPPPKGP 362
Query: 626 XXPXXPPPXXTXKKXPPHXXGGXPXXXFKXPG 721
P PPP PP G PG
Sbjct: 363 SPPPPPPPGGKKGGPPPPPPKGGASRPPAAPG 394
Score = 33.5 bits (73), Expect = 0.24
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +2
Query: 401 KXPPXPXXXGFXFWXPXPFPPXXXPXPXXSG--GGXGXPPPXGGXXXXPXXRGXP 559
K PP P P P P P P G GG PPP GG P G P
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/71 (32%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Frame = +2
Query: 452 PFPPXXXPXPXXSGGGXGXPPP-----XGGXXXXPXXRGXPXKKXFNXRXXXGPXP*XGP 616
P PP P P +G G G PPP G P R GP P P
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390
Query: 617 XGGXXPXXPPP 649
GG PPP
Sbjct: 391 -GGPRARGPPP 400
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 410 PXPXXXGFXFWXPXPFPPXXXPXPXXSGGGXGXPPPXG 523
P P G P P PP P G G G PPP G
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/82 (26%), Positives = 23/82 (28%)
Frame = +2
Query: 452 PFPPXXXPXPXXSGGGXGXPPPXGGXXXXPXXRGXPXKKXFNXRXXXGPXP*XGPXGGXX 631
P PP P +G G G PPP P P P G
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAP------------PPPAPSPSAAGAGSGP 349
Query: 632 PXXPPPXXTXKKXPPHXXGGXP 697
P PPP PP G P
Sbjct: 350 PPPPPPAAPAAPRPPGPGPGPP 371
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +2
Query: 446 PXPFPPXXXPXPXXSGGGXGXPPPXGGXXXXPXXRGXPXKK 568
P P PP P P +G G G PPP P RG P K
Sbjct: 366 PGPGPP---PPPGAAGRGGGGPPPPA-LPGGPRARGPPPFK 402
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.5 bits (73), Expect = 0.24
Identities = 28/99 (28%), Positives = 30/99 (30%), Gaps = 4/99 (4%)
Frame = +2
Query: 407 PPXPXXXGFXFWXPXP--FPPXXXPXPXXSGG--GXGXPPPXGGXXXXPXXRGXPXKKXF 574
PP P G P P P P GG G PPP GG P +
Sbjct: 1086 PPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGI 1145
Query: 575 NXRXXXGPXP*XGPXGGXXPXXPPPXXTXKKXPPHXXGG 691
P P G GG PP PP+ GG
Sbjct: 1146 GG---VPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGG 1181
Score = 30.7 bits (66), Expect = 1.7
Identities = 29/103 (28%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Frame = +2
Query: 407 PPXPXXXGFXFWXPXPFPPXXXPXPXXSGGGXGXPPPXGGXXXXPXX------RGXPXKK 568
PP P G P PP GG PPP GG P RG
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGI-----GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
Query: 569 XFNXRXXXGPXP*XGPXGGXXPXXPPPXXTXKKXPPHXXGGXP 697
+ P P G GG PP PP GG P
Sbjct: 1177 NAHGGVAPPPPPPRG-HGGVGGPPTPPGAPAPPMPPGVPGGPP 1218
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +2
Query: 407 PPXPXXXGFXFWXPXPFPPXXXPXPXXSGGGXGXPPPXGG 526
PP P G P PP P G G PPP GG
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 409 PXPXGXGVXFLGPXPXPPPXXPXP 480
P P G FL P P PPP P P
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPP 65
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/82 (31%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Frame = +2
Query: 446 PXPFPPXXXPXPXXSGGGX-----GXPPPXGGXXXXPXXRGXPXKKXFNXRXXXGPXP*X 610
P P P P P G G PPP G P RG P R P
Sbjct: 175 PPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPG----PFMRGPPPMGPPQVR----PGMPG 226
Query: 611 GPXGGXXPXXPPPXXTXKKXPP 676
GP G P PPP PP
Sbjct: 227 GPPPGMRPGMPPPPFRPGMPPP 248
>01_01_0046 - 331758-332627
Length = 289
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/79 (26%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Frame = +2
Query: 416 PXXXGFXFWXPXPFPPXXXPXPXXSGGGXGXPPPXG--GXXXXPXXRGXPXKKXFNXRXX 589
P F +W P PP P P S PP P R P N R
Sbjct: 10 PQRYWFPYWTSPPPPPPPPPPPPSSSRYRPPSPPSSRHPHPTIPAARAAPPLGPTNRRLH 69
Query: 590 XGPXP*XGPXGGXXPXXPP 646
P P G P P
Sbjct: 70 QQPPPPASRDGRHEPPPKP 88
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 410 PXPXXXGFXFWXPXPFPPXXXPXPXXSGGGXGXPP 514
P P G+ P +PP P P GGG G PP
Sbjct: 31 PYPPQQGYYPPPPTAYPP---PPPAGYGGGYGYPP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,336,971
Number of Sequences: 37544
Number of extensions: 221905
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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