Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A02
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 159 6e-40
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 1.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 1.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 2.1
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 27 2.7
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 27 4.7
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.3
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 26 6.3
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 159 bits (385), Expect = 6e-40
Identities = 79/155 (50%), Positives = 104/155 (67%)
Frame = +3
Query: 180 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCI 359
D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++KGKRRK+TV I
Sbjct: 31 DTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLI 90
Query: 360 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 539
VL+D+ D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+L
Sbjct: 91 VLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSL 150
Query: 540 FEVYLKPYFMGXLPSDPS*RHLHGSAGGMRAVEFK 644
F+VYLKPYF+ L G MR VEFK
Sbjct: 151 FDVYLKPYFVEAYRPIRK-GDLFVVRGSMRQVEFK 184
Score = 39.5 bits (88), Expect = 6e-04
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +1
Query: 574 AYRPIHRDDTFMGPRGACAPSSSKVVETDPSPFCIRGS*YXIHCDGEPIN 723
AYRPI + D F+ RG+ KVV+ P F I IH +GEPIN
Sbjct: 162 AYRPIRKGDLFV-VRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPIN 210
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 519 QLNHQLAVCGLV---FHISLKDTERWI 448
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 519 QLNHQLAVCGLV---FHISLKDTERWI 448
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 489 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 379
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 214 DPTVSLSKKQSAMTTQSWH-FHRPKW 288
DP ++ + Q + T+SWH FH +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 180 DLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRKETV 353
D+S + RR R + + A S D++ V A S +L G+T+ K V
Sbjct: 246 DMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHKAAV 305
Query: 354 CIVLSD 371
C+ L+D
Sbjct: 306 CVALND 311
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 196 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 339
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +3
Query: 153 KWQIIKALXDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 329
KW+ + + A ++K+ R EEA + ++ A +AK ++ + + D ++K
Sbjct: 300 KWEREAGAREAAAAAQKKKEEEERRAAEEAAAKASAAAANKKAKEDKKKAQKRDKKVVK 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,130
Number of Sequences: 5004
Number of extensions: 68315
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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