Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A02
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 188 4e-48
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 186 2e-47
08_02_0657 - 19749835-19751942,19753123-19753561 145 5e-35
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 30 2.8
06_01_0899 + 6918528-6918620,6918918-6918938,6921182-6921340 29 3.8
06_01_0057 - 483710-484309 29 5.0
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 29 5.0
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 188 bits (459), Expect = 4e-48
Identities = 94/160 (58%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Frame = +3
Query: 168 KALXDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 347
K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+RK+
Sbjct: 14 KGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKKRKD 73
Query: 348 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 527
T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHILPIDD+VEG+
Sbjct: 74 TICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGI 133
Query: 528 TGNLFEVYLKPYFM-GXLPSDPS*RHLHGSAGGMRAVEFK 644
TGNLF+ +LKPYF+ P L GGMR+VEFK
Sbjct: 134 TGNLFDAFLKPYFLEAYRPLRKG--DLFLVRGGMRSVEFK 171
Score = 48.4 bits (110), Expect = 8e-06
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 574 AYRPIHRDDTFMGPRGACAPSSSKVVETDPSPFCIRGS*YXIHCDGEPI 720
AYRP+ + D F+ RG KV+ETDP+ +CI I CDGEPI
Sbjct: 149 AYRPLRKGDLFL-VRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPI 196
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 186 bits (453), Expect = 2e-47
Identities = 94/159 (59%), Positives = 111/159 (69%)
Frame = +3
Query: 168 KALXDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 347
K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+RK+
Sbjct: 14 KGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKD 73
Query: 348 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 527
T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHILPIDD+VEG+
Sbjct: 74 TICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGI 133
Query: 528 TGNLFEVYLKPYFMGXLPSDPS*RHLHGSAGGMRAVEFK 644
TGNLF+ +LKPYF+ L GGMR+VEFK
Sbjct: 134 TGNLFDAFLKPYFLEAYRPVRK-GDLFLVRGGMRSVEFK 171
Score = 48.8 bits (111), Expect = 6e-06
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 574 AYRPIHRDDTFMGPRGACAPSSSKVVETDPSPFCIRGS*YXIHCDGEPI 720
AYRP+ + D F+ RG KV+ETDP+ +CI I CDGEPI
Sbjct: 149 AYRPVRKGDLFL-VRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPI 196
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 145 bits (351), Expect = 5e-35
Identities = 77/161 (47%), Positives = 103/161 (63%), Gaps = 6/161 (3%)
Frame = +3
Query: 180 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 344
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 345 ETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEG 524
E VC D++CPD ++R+ D+V++ PCP+++ KRV + P DDSVEG
Sbjct: 76 EAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEG 135
Query: 525 LTGNLFEVYLKPYFMGXL-PSDPS*RHLHGSAGGMRAVEFK 644
++G+LFE YLKPYFM L P R L G M AVEFK
Sbjct: 136 ISGDLFEPYLKPYFMDALRPVKKGDRFL--VRGHMHAVEFK 174
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 882 GNPGGRXHPQNPGPGRDNPGAXPPXSLIGPXCLRQPPXV 766
G+P R HP PGPG NP A + P +Q P V
Sbjct: 37 GDP--RRHPPPPGPGARNPAASSAAAFRPPPQPQQQPRV 73
>06_01_0899 + 6918528-6918620,6918918-6918938,6921182-6921340
Length = 90
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -2
Query: 689 QEPRMQ-NGDGSVSTTFELDGAHAPRGPMKVSSRW--IGR*ASHEVR 558
QEP+ +G+G + + E+DG A MK+ RW IG+ + E+R
Sbjct: 7 QEPKSAWDGEGDGNDSQEVDGKTATMTMMKIGGRWLPIGKMVAAELR 53
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 184 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 330
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 891 PKKGNPGGRXHPQNPGPGRDNPGAXPPXSLIGPXCLRQP 775
P+ GR HP P PG +PGA P S + +++P
Sbjct: 284 PRSDFDSGR-HPFMPVPGEPSPGAFPARSYVEQQRMQRP 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,502,621
Number of Sequences: 37544
Number of extensions: 500494
Number of successful extensions: 1278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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