Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_A02
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 179 2e-45
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 169 2e-42
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 169 2e-42
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.48
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 32 0.48
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 5.9
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 5.9
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 5.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 5.9
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 5.9
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 5.9
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 28 7.8
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 28 7.8
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 179 bits (436), Expect = 2e-45
Identities = 101/229 (44%), Positives = 140/229 (61%), Gaps = 3/229 (1%)
Frame = +3
Query: 180 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCI 359
+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE+V I
Sbjct: 17 ELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKESVAI 76
Query: 360 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 539
++SD++CP+EK+RM DVVSI P P++ YG R+H+LPIDD++EGLTGNL
Sbjct: 77 IVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNL 136
Query: 540 FEVYLKPYFM-GXLPSDPS*RHLHGSAGGMRAVEFK--SGRNRSITILHPWLLIRNTL*R 710
F+V+LKPYF+ P + MR VEFK I+ P +I
Sbjct: 137 FDVFLKPYFLEAYRPLHKG--DIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYE--G 192
Query: 711 *TD*REEXXXALNAVXXLLXXXVVANXWGQLRXLVXLPLGYPFLVQGFG 857
REE ++N + V Q++ +V LPL +P L + G
Sbjct: 193 DPIKREEEEESMNDI-GYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIG 240
Score = 46.0 bits (104), Expect = 4e-05
Identities = 33/105 (31%), Positives = 45/105 (42%)
Frame = +1
Query: 574 AYRPIHRDDTFMGPRGACAPSSSKVVETDPSPFCIRGS*YXIHCDGEPINVRXXRXP*ML 753
AYRP+H+ D F + A KVVET+P+P CI IH +G+PI
Sbjct: 148 AYRPLHKGDIFT-VQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMND 206
Query: 754 SGYYYXXXLSQTXGAN*GXWWXCPWVIPSWSRVLGVXPPPGISFF 888
GY + + A P P + +G+ PP GI F
Sbjct: 207 IGYDDLGGVRKQL-AQIKEMVELPLRHPQLFKAIGIKPPRGILLF 250
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 169 bits (412), Expect = 2e-42
Identities = 105/237 (44%), Positives = 142/237 (59%), Gaps = 2/237 (0%)
Frame = +3
Query: 180 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCI 359
+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV I
Sbjct: 17 ELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSI 76
Query: 360 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 539
VL+ DNCP++KI+M DVVSI+ ++YGKRVH+LPIDD++EGLTGNL
Sbjct: 77 VLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNL 135
Query: 540 FEVYLKPYFMGXLPSDPS*RHLHGSAGGMRAVEFKSGRN--RSITILHPWLLIRNTL*R* 713
F+V+L+PYF + MR VEFK I+ P +I
Sbjct: 136 FDVFLRPYFTDAYRPVHK-GDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYE--GD 192
Query: 714 TD*REEXXXALNAVXXLLXXXVVANXWGQLRXLVXLPLGYPFLVQGFGGEXSPRDFL 884
REE ALN V V Q++ +V LPL +P L + G + PR L
Sbjct: 193 PIKREEEEEALNEV-GYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVK-PPRGIL 247
Score = 48.8 bits (111), Expect = 5e-06
Identities = 35/105 (33%), Positives = 45/105 (42%)
Frame = +1
Query: 574 AYRPIHRDDTFMGPRGACAPSSSKVVETDPSPFCIRGS*YXIHCDGEPINVRXXRXP*ML 753
AYRP+H+ D F + A KVVETDP+P CI IH +G+PI
Sbjct: 147 AYRPVHKGDIFT-VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNE 205
Query: 754 SGYYYXXXLSQTXGAN*GXWWXCPWVIPSWSRVLGVXPPPGISFF 888
GY + + A P P + +GV PP GI F
Sbjct: 206 VGYDDLGGVRKQL-AQIKEMVELPLRHPQLFKAIGVKPPRGILLF 249
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 169 bits (412), Expect = 2e-42
Identities = 105/237 (44%), Positives = 142/237 (59%), Gaps = 2/237 (0%)
Frame = +3
Query: 180 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCI 359
+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+ETV I
Sbjct: 17 ELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSI 76
Query: 360 VLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNL 539
VL+ DNCP++KI+M DVVSI+ ++YGKRVH+LPIDD++EGLTGNL
Sbjct: 77 VLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNL 135
Query: 540 FEVYLKPYFMGXLPSDPS*RHLHGSAGGMRAVEFKSGRN--RSITILHPWLLIRNTL*R* 713
F+V+L+PYF + MR VEFK I+ P +I
Sbjct: 136 FDVFLRPYFTDAYRPVHK-GDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYE--GD 192
Query: 714 TD*REEXXXALNAVXXLLXXXVVANXWGQLRXLVXLPLGYPFLVQGFGGEXSPRDFL 884
REE ALN V V Q++ +V LPL +P L + G + PR L
Sbjct: 193 PIKREEEEEALNEV-GYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVK-PPRGIL 247
Score = 48.8 bits (111), Expect = 5e-06
Identities = 35/105 (33%), Positives = 45/105 (42%)
Frame = +1
Query: 574 AYRPIHRDDTFMGPRGACAPSSSKVVETDPSPFCIRGS*YXIHCDGEPINVRXXRXP*ML 753
AYRP+H+ D F + A KVVETDP+P CI IH +G+PI
Sbjct: 147 AYRPVHKGDIFT-VQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNE 205
Query: 754 SGYYYXXXLSQTXGAN*GXWWXCPWVIPSWSRVLGVXPPPGISFF 888
GY + + A P P + +GV PP GI F
Sbjct: 206 VGYDDLGGVRKQL-AQIKEMVELPLRHPQLFKAIGVKPPRGILLF 249
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 891 PKKGNPGGRXHPQNPGPGRDNPGAXPPXSLIGPXCLRQPP 772
P +G PG Q+PGP PG PP ++ P PP
Sbjct: 713 PPQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPP 752
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 888 KKGNPGGRXHPQNPG-PGRDNPGAXPPXSLIGPXCLRQPP 772
+ G PG P NPG PGRD GA P P C + PP
Sbjct: 121 RDGRPGAPGRPGNPGPPGRD--GALLPGPPPKPPCQKCPP 158
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 891 PKKGNPGGRXHPQNPGPGRDNPGAXPPXSLIGP 793
P PGGR Q P P R PGA PP + P
Sbjct: 769 PAPAPPGGR---QAPMPPRGGPGAPPPPGMRPP 798
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 891 PKKGNPGGRXHPQNPGPGRDNPGAXPPXSLIGP 793
P PGGR Q P P R PGA PP + P
Sbjct: 769 PAPAPPGGR---QAPMPPRGGPGAPPPPGMRPP 798
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 888 KKGNPGGRXHPQNPG-PGRDNPGAXP 814
++GNPG P +PG PG+D P P
Sbjct: 47 ERGNPGFGGEPGHPGAPGQDGPEGAP 72
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 888 KKGNPGGRXHPQNPG-PGRDNPGAXP 814
++GNPG P +PG PG+D P P
Sbjct: 47 ERGNPGFGGEPGHPGAPGQDGPEGAP 72
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 888 KKGNPGGRXHPQNPG-PGRDNPGAXP 814
++GNPG P +PG PG+D P P
Sbjct: 47 ERGNPGFGGEPGHPGAPGQDGPEGAP 72
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 891 PKKGNPGGRXHPQNPGPGRDNPGAXPPXSLIGP 793
P PGGR Q P P R PGA PP + P
Sbjct: 769 PAPAPPGGR---QAPMPPRGGPGAPPPPGMRPP 798
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 882 GNPGGRXHPQNPG-PGR--DNPGAXPPXSLIGP 793
GNPG P NPG PG+ + PG P GP
Sbjct: 210 GNPGTDGAPGNPGAPGQVTETPGTPGPAGAAGP 242
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 891 PKKGNPGGRXHPQNPGPGRDNPGAXPPXSLIGP 793
P PGGR Q P P R PGA PP + P
Sbjct: 769 PAPAPPGGR---QAPMPPRGGPGAPPPPGMRPP 798
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 882 GNPGGRXHPQNPG-PGR--DNPGAXPPXSLIGP 793
GNPG P NPG PG+ + PG P GP
Sbjct: 220 GNPGTDGAPGNPGAPGQVTETPGTPGPAGAAGP 252
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
protein C10C6.1 protein.
Length = 1565
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 187 RPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSRANAARKPFASC 363
R RSS+ +DP +S S S T T S H + SS T S +R + A +P
Sbjct: 66 RVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANR-SPANRPSLHS 124
Query: 364 SQTIIALMR 390
S + + L R
Sbjct: 125 STSPVTLQR 133
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 187 RPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSRANAARKPFASC 363
R RSS+ +DP +S S S T T S H + SS T S +R + A +P
Sbjct: 66 RVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANR-SPANRPSLHS 124
Query: 364 SQTIIALMR 390
S + + L R
Sbjct: 125 STSPVTLQR 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,093,664
Number of Sequences: 27780
Number of extensions: 414851
Number of successful extensions: 1108
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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