Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P24
         (874 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    49   1e-04
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    44   0.007
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    42   0.027
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    38   0.25 
UniRef50_Q1M0X8 Cluster: MPA13 allergen; n=5; Neoptera|Rep: MPA1...    35   3.1  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 678 RGEAVCVLGALPXPRSLTRXXRSFGCGERYQLT 776
           R   +C  G +P PRSLTR  RSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 22/35 (62%), Positives = 23/35 (65%)
 Frame = +3

Query: 654 CINESANARGEAVCVLGALPXPRSLTRXXRSFGCG 758
           CI + A AR EAV VL ALP  RS TR  RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.5 bits (93), Expect = 0.027
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +1

Query: 580 INKLTTTIAFILCFRFRGRCGKVFSALMNRPTRGERRFAYW 702
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 706 APNTQTASPRALADSLMQ 653
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = -2

Query: 855 PFXXLLXTCXFXXYPLILWITVLP 784
           P    L TC F  YPLILWITVLP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLP 42



 Score = 35.1 bits (77), Expect = 2.3
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = -3

Query: 785 PPLSELIPLAAAERPXXASQ 726
           PPLSEL PLAA ERP  ASQ
Sbjct: 42  PPLSELTPLAAVERPSVASQ 61


>UniRef50_Q1M0X8 Cluster: MPA13 allergen; n=5; Neoptera|Rep: MPA13
           allergen - Periplaneta americana (American cockroach)
          Length = 131

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 44  TYVRXFGPEEMKAVMTAKDVTCTRVYK 124
           T +R F  +E+K  +T  D+ CTR+YK
Sbjct: 103 TIIRDFSNDEIKMTLTVDDIVCTRIYK 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,064,506
Number of Sequences: 1657284
Number of extensions: 9420007
Number of successful extensions: 19125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19118
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)