Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P24
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    30   2.5  
U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine rece...    29   4.3  

>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 601 IAFILCFRFRGRCGKVFSALM 663
           I FI+C  F G  G++FS LM
Sbjct: 225 IPFIICMEFMGNSGRIFSGLM 245


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 601 IAFILCFRFRGRCGKVFSALM 663
           I FI+C  F G  G++FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 601 IAFILCFRFRGRCGKVFSALM 663
           I FI+C  F G  G++FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228


>U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform c protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 167 ADSRTSRGTIMFI*HLFYTLALSSFFVKLILVFTSVIVYRSNC 295
           ADS  + G I+F  HLF+ +  S F   L+ + T + V   +C
Sbjct: 51  ADSLHNYGQIIFTAHLFFDIQTSHFVCTLLNIPTLIGVISGSC 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,190
Number of Sequences: 27780
Number of extensions: 226701
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)