Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P22
         (934 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    52   2e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    40   0.090
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    36   1.1  
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    33   7.9  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 28/41 (68%), Positives = 30/41 (73%)
 Frame = +2

Query: 386 SAXSLTHSPRSVVRLQRAXSXHSXAXIRXSTQSGDXAGXXM 508
           SA SLT S RSVVRL+RA S HS A IR ST+SGD AG  M
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 39.9 bits (89), Expect = 0.090
 Identities = 18/28 (64%), Positives = 19/28 (67%)
 Frame = +3

Query: 369 CVLRALPLPHSLTRRARSFGCSEXYPLT 452
           C    +PLP SLTR ARSFGC E Y LT
Sbjct: 31  CDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 291 CCIVQGDVWEVLSXMNXSAXARGQAXCVLRALPLPHSLTRRARSFGCSEXYPL-TRRRXY 467
           C     D W   S +   A AR +A  VL ALPL  S TR  RS GC       +  R Y
Sbjct: 254 CPFSTRDTWRA-SCIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPY 312

Query: 468 GXP 476
           G P
Sbjct: 313 GDP 315


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 33.5 bits (73), Expect = 7.9
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +1

Query: 340 NXPTRGDRRXAYCAXFRXLTH 402
           N PTRG+RR AY A FR L H
Sbjct: 29  NRPTRGERRFAYWALFRFLAH 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,102,828
Number of Sequences: 1657284
Number of extensions: 5477361
Number of successful extensions: 6505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6505
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85324527343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)