Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P20
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    89   7e-19
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.4  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    27   3.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.0  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   7.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   7.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 89.0 bits (211), Expect = 7e-19
 Identities = 43/104 (41%), Positives = 61/104 (58%)
 Frame = +2

Query: 308 ILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLR 487
           +L F L +  +YG  +F      +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL 
Sbjct: 68  MLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLE 125

Query: 488 ILLTIFNTIAFQDAVMDWARDHRMHHKIFRX*CGPHXATRGFFF 619
             L      AF+ ++  W+RDHR HH+       P+   +GF++
Sbjct: 126 YFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWY 169


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 403 QKYGEYRSPPHGFEKEQVSSINTTDMQNKEQNHVFSTQSSMVSFSAEG 260
           Q+Y E R      + E + S+N++   +   N++ S Q    S   EG
Sbjct: 368 QRYDELRRELADIQNESLDSLNSSSNNSPSHNNIHSRQHPFSSDEDEG 415


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 193 ASWVLYETDANDLPXRLHRPMYLPQQRKRPWKIV 294
           +S++L   D NDL    H     P  RK PWK+V
Sbjct: 222 SSYILGNIDFNDLDLSNH-----PYPRKSPWKVV 250


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 435 PAVIPNPEHKYKNMANIEVLHMALKRNRYPP*TPPTCRIKNRITFSPHNLPWS 277
           P + P P H    +++  +    L     P   PP  R+K+  T  P ++P S
Sbjct: 359 PRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPPPRVKSLATNKPVSMPVS 411


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = +1

Query: 298 RKRDSVLYSAC-------RWCLWRIPVPFQSHVEDFY 387
           R RD++    C       RWCL   P+  Q+H+++FY
Sbjct: 403 RNRDTLAAKCCVKLDAKYRWCLSGTPI--QNHIDEFY 437


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 328 CRWCLWRIPVPFQSHVEDFYIRH 396
           CR CL  I  P +S +E++ ++H
Sbjct: 105 CRVCLTNIGQPERSRIENYVLKH 127


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 410 TSTKIWRI*KSSTWL*KGTGILHKHHRHA 324
           T+T +WR    ++ L    G+  KH +HA
Sbjct: 18  TTTSLWRRGPDNSLLCNACGLYQKHRKHA 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,980
Number of Sequences: 5004
Number of extensions: 57938
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)