Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P20
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -1

Query: 400 KYGEYRSPPHGFEKEQVSSINTTDMQNKEQNHVFSTQSSMVSFSAEGGTWGG 245
           K+ E+RS     +K + S I TT+  + + N  F    S     +   +W G
Sbjct: 658 KHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEG 709


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 361 KEQVSSINTTDMQNKEQNHVFSTQSSMVSFSAEGGTWGG 245
           K+Q S  +T + +N E      T +  V+ ++ GG  GG
Sbjct: 565 KKQPSDCDTLEYRNGEVTTPLFTPAVGVAAASAGGAGGG 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,900
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)