Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P19
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 29 3.8
06_01_0842 + 6383033-6383430,6383548-6383627,6383974-6384085,638... 29 3.8
04_04_1324 + 32659752-32661972,32662067-32662761 29 3.8
01_06_1246 - 35703119-35703811,35704033-35704074,35704355-357045... 29 3.8
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 29 5.0
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496... 29 5.0
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 29 5.0
03_02_0957 - 12710656-12711017,12711479-12711665 29 5.0
06_03_1358 - 29548440-29549315 29 6.6
05_05_0044 - 21819193-21819418,21819531-21820759 29 6.6
05_03_0458 + 14280953-14281866,14281964-14282912 29 6.6
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 139 TASSNPPST*KQSRRPASGTRCAAEG 216
T +S+PPS Q RRPASG +G
Sbjct: 112 TETSSPPSAAMQQRRPASGRPSGTDG 137
>06_01_0842 +
6383033-6383430,6383548-6383627,6383974-6384085,
6384355-6384454,6384682-6384744,6385857-6386011,
6386109-6386286,6386787-6386954
Length = 417
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 301 ADLSAVRLRTPATKTMSAPPPTRSLSLQCIPSAAENYRSAKTDLIEELK 447
AD AVR R T M P P RS S++ + A+E + + +EE K
Sbjct: 183 ADPGAVRRRLTPTLRMFEPDPARSASMEDV-EASEKFIAGILSRVEERK 230
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -2
Query: 657 QLSAXSXAA-SXAGITLPXASLSGTCGHPXIHKVLRGEPLREFCEGLLILEALAARSLHL 481
+LS+ + A + G +P A +G+ G H+ L G E EG+ + E LA
Sbjct: 176 ELSSNALAIITSLGELMPAAKSNGSTG---AHRRLLGLQGSEAAEGVSLRELLAVHDKVQ 232
Query: 480 QLLDPADVLRH 448
+L D DV RH
Sbjct: 233 ELTDVKDVSRH 243
>01_06_1246 -
35703119-35703811,35704033-35704074,35704355-35704576,
35705077-35705466,35705560-35705637
Length = 474
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 313 AVRLRTPATKTMSAPPPTR---SLSLQCIPSAAENYRSAKTDLIEELKMSKDISGIKKLK 483
A+ ++ PAT S+ PP+R S +PS R A + L D+ I ++
Sbjct: 309 AISIQRPATPNKSSRPPSRQSPSTPPSRVPSVTGKIRPA-SPRDSWLYKEDDLRSITSIR 367
Query: 484 VERARRES 507
ER RR+S
Sbjct: 368 SERPRRQS 375
>10_08_0917 -
21550332-21550685,21550726-21550765,21551766-21551767,
21552094-21552633
Length = 311
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 139 SGALCGKAGGTNGSAGCLL 83
SGA CG GG G GCLL
Sbjct: 5 SGAACGVCGGGVGECGCLL 23
>08_01_0999 +
10145782-10146392,10147665-10147734,10149409-10149643,
10149726-10149799,10149881-10149955
Length = 354
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 295 SSADLSAVRLRTPATKTMSAPPPTRSLSLQCIPS 396
SS+ L + L P++ + P P+R+ SL+C PS
Sbjct: 47 SSSHLHLLPLHDPSSPLAALPLPSRAASLRCSPS 80
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 328 TPATKTMSAPPPTRSLSLQCIPSAAENYRSAKTDLIE--ELKMSKDISGIKKLKVERAR 498
T + + AP P + + +A + SA DL E + + S+ +S +KK KVER R
Sbjct: 63 TQDVQVLEAPSPAANPFSNALLTAPKPTSSAAADLPEGAQWRYSEFLSAVKKGKVERVR 121
>03_02_0957 - 12710656-12711017,12711479-12711665
Length = 182
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -3
Query: 443 SSSIRSVLALR*FSAALGIHCRLRDLVGGGADMVLVAGV 327
SSSIRS+L A+GI + GGA M LV GV
Sbjct: 6 SSSIRSLLLAAALLVAVGISPHAAEASSGGAVMGLVTGV 44
>06_03_1358 - 29548440-29549315
Length = 291
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 82 STSSPRYHSCRQPSRTTRPTASSNPPST*KQSRRPASGTRCAAE 213
S ++P +H+ PS T P A PP+ Q RRP + A E
Sbjct: 76 SATAPPHHTDPPPSETPDP-APPAPPAPAAQERRPEDAAKEAQE 118
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 118 PSRTTRPTASSNPPST*KQSRRPASGTRCAAEGR 219
PS R +ASS+PPST S RPA G A R
Sbjct: 10 PSPCARSSASSSPPST--SSSRPALGGAGLARSR 41
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 73 PTSSTSSPRYHSCRQPSRTTRPTASSNPPST*KQSRRPASGTRCAA 210
PT+ + S PS TT P+ASS PP + R AS ++C+A
Sbjct: 80 PTTLSCSSHPTPPPPPSPTTSPSASSLPP---VPTPRSASSSKCSA 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,117,242
Number of Sequences: 37544
Number of extensions: 281777
Number of successful extensions: 1529
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -