Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P19
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z73102-15|CAA97416.1|  401|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   6.0  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 61  TCADPTSSTSSPRYHSCRQPSRTTRPTASSNPPST*KQSRRPAS 192
           T    T  TS+    +  QPS TT+PT +S PP+T  ++  PA+
Sbjct: 218 TTTTSTFPTSTTEKSTTAQPSTTTKPTTTS-PPTTQVKTILPAT 260


>Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical
           protein R06B9.1 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 72  PNLVNKQPALPFVPPAFPHNAPDRLIKPSEYLKTITAPC 188
           P L+   P   ++PP  P+N P  L  P   L  +  PC
Sbjct: 325 PILIGTVPIRNYLPPPIPNNYPIGLPPPYANLTDVNVPC 363


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 76  TSSTSSPRYHSCRQPSRTTRPTASSNPPST 165
           TS++++PRYH+ R+ S T R   SS+   T
Sbjct: 906 TSTSAAPRYHNSRRISETLRIVLSSDAQET 935


>Z73102-15|CAA97416.1|  401|Caenorhabditis elegans Hypothetical
           protein B0035.14 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 319 RLRTPATKTMSAPPPTRSLSLQCIPSAAENYRSAKTDLIEELKMSKDISGIKKL 480
           + R+P  K     P  +  S    P    +Y S + +L+E ++  KD   I K+
Sbjct: 91  KARSPVKKNGKTEPEPKQRSASRTPKLGVDYTSEQKELVERIRHCKDYYEILKI 144


>Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical
           protein F11A10.3 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 319 RLRTPATKTMSAPPPTRSLSLQCIPSAAENYRSAKTDLIEELKMSKDISGIKKLKVER 492
           +L+T   K   +PP T   S    PS + +  + K+D+  +      ++ + K+K+E+
Sbjct: 121 KLQTKKKKKKESPPETPPTSPSPSPSRSVSPSTTKSDISSKKGRKAVVNSVSKVKIEK 178


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 57  SDLRGPNLVNKQPALPFVPPAFPHNAPDRLIKPSEYLKTITAP 185
           SDL GP+     P  P  PP  PH  P R  +P+   +   +P
Sbjct: 77  SDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTRLPRPSRSP 119


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 42  ILMTTSDLRGPNLVNKQPALPFVPPAFPHNAPDRLIKPSEYLKTI 176
           +++ T D   PN+V    A+PF+PP+ P    D L+K  + L+ I
Sbjct: 581 LIIATPDPELPNIV---AAVPFIPPS-PKGPNDGLVKLDDELEKI 621


>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 42  ILMTTSDLRGPNLVNKQPALPFVPPAFPHNAPDRLIKPSEYLKTI 176
           +++ T D   PN+V    A+PF+PP+ P    D L+K  + L+ I
Sbjct: 603 LIVATPDPELPNIV---AAVPFIPPS-PKGPNDGLVKLDDELEKI 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,576,565
Number of Sequences: 27780
Number of extensions: 201262
Number of successful extensions: 1121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)