Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P18
(907 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein... 54 7e-07
D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subuni... 54 7e-07
CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein. 54 7e-07
BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase... 54 7e-07
BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase... 54 7e-07
BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase... 54 7e-07
AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase... 54 7e-07
AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase... 54 7e-07
AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane prote... 42 0.002
AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase... 42 0.002
AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase... 41 0.005
>U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein
CII-3 protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subunit
of complex II protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase
subunit C protein.
Length = 169
Score = 54.0 bits (124), Expect = 7e-07
Identities = 30/108 (27%), Positives = 42/108 (38%)
Frame = -3
Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
N PL PH+T S+ L TG+ L+ G+ P + Y+
Sbjct: 49 NRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCL 108
Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
PA + AK + P Y GIRHL WD +G + +G L
Sbjct: 109 GPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 156
>AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane protein
CII-3b protein.
Length = 135
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/103 (24%), Positives = 37/103 (35%)
Frame = -3
Query: 548 PHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXFXPAXL 369
P L ++ L TG+ L+ G+ P + Y+ PA +
Sbjct: 20 PQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALI 79
Query: 368 FLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
AK + P Y GIRHL WD +G + +G L
Sbjct: 80 HTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 122
>AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase
complex, subunit C delta3 alternative splicing variant
protein.
Length = 135
Score = 42.3 bits (95), Expect = 0.002
Identities = 25/103 (24%), Positives = 37/103 (35%)
Frame = -3
Query: 548 PHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXFXPAXL 369
P L ++ L TG+ L+ G+ P + Y+ PA +
Sbjct: 20 PQLCIRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALI 79
Query: 368 FLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXL 240
AK + P Y GIRHL WD +G + +G L
Sbjct: 80 HTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVL 122
>AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase
complex, subunit C delta2+3 alternative splicing varian
protein.
Length = 116
Score = 41.1 bits (92), Expect = 0.005
Identities = 22/83 (26%), Positives = 32/83 (38%)
Frame = -3
Query: 488 TGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXFXPAXLFLAKVXIXAPXGYXFGXGIR 309
TG+ L+ G+ P + Y+ PA + AK + P Y GIR
Sbjct: 21 TGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIR 80
Query: 308 HLXWDXAQGXXXXEXXFTGYAXL 240
HL WD +G + +G L
Sbjct: 81 HLMWDLGKGLKIPQLYQSGVVVL 103
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,276,474
Number of Sequences: 237096
Number of extensions: 251519
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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