Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P18
         (907 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113556-1|AAM29561.1|  171|Drosophila melanogaster RH04289p pro...    60   5e-09
AY071728-1|AAL49350.1|  171|Drosophila melanogaster RH44771p pro...    60   5e-09
AE014297-1254|AAF54602.2|  171|Drosophila melanogaster CG6666-PA...    60   5e-09
AY089360-1|AAL90098.1|  261|Drosophila melanogaster AT18465p pro...    41   0.003
AE014297-1237|AAF54585.1|  261|Drosophila melanogaster CG6629-PA...    41   0.003

>AY113556-1|AAM29561.1|  171|Drosophila melanogaster RH04289p
           protein.
          Length = 171

 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 36/116 (31%), Positives = 45/116 (38%)
 Frame = -3

Query: 566 LNXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXX 387
           L   L PHLT     L          TG+ L      LG+G   S +D   Y+    G  
Sbjct: 50  LGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQ 109

Query: 386 FXPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXLGXAXAIT 219
              A L   K  I  P GY    GIRHL WD  +     E   TGYA +  +  ++
Sbjct: 110 LSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 165


>AY071728-1|AAL49350.1|  171|Drosophila melanogaster RH44771p
           protein.
          Length = 171

 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 36/116 (31%), Positives = 45/116 (38%)
 Frame = -3

Query: 566 LNXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXX 387
           L   L PHLT     L          TG+ L      LG+G   S +D   Y+    G  
Sbjct: 50  LGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQ 109

Query: 386 FXPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXLGXAXAIT 219
              A L   K  I  P GY    GIRHL WD  +     E   TGYA +  +  ++
Sbjct: 110 LSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 165


>AE014297-1254|AAF54602.2|  171|Drosophila melanogaster CG6666-PA
           protein.
          Length = 171

 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 36/116 (31%), Positives = 45/116 (38%)
 Frame = -3

Query: 566 LNXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXX 387
           L   L PHLT     L          TG+ L      LG+G   S +D   Y+    G  
Sbjct: 50  LGRELSPHLTIYQPQLTSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQ 109

Query: 386 FXPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXFTGYAXLGXAXAIT 219
              A L   K  I  P GY    GIRHL WD  +     E   TGYA +  +  ++
Sbjct: 110 LSGATLTALKFIIAYPAGYHTANGIRHLLWDTGRFLKIKEVYSTGYAMVATSFVLS 165


>AY089360-1|AAL90098.1|  261|Drosophila melanogaster AT18465p
           protein.
          Length = 261

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 2/142 (1%)
 Frame = -3

Query: 632 PXITF--VKFEPPKXXHXDVXDXXLNXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAX 459
           P +T   + F  P     D  +  L   L PHL+     L          +G +L     
Sbjct: 58  PPVTLKVIPFRMPPDLPYDDRNMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVW 117

Query: 458 ALGIGXXXSPNDXXXYIXXXXGXXFXPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGX 279
            +GI       D   +I            + +AKV +  P  Y    G RHL W   +  
Sbjct: 118 FVGISGLCLQGDMEGFIKKVEKCDCH-GMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFL 176

Query: 278 XXXEXXFTGYAXLGXAXAITLF 213
              E   TGY  +    A++ F
Sbjct: 177 TIPEIYATGYVAVALTIALSAF 198


>AE014297-1237|AAF54585.1|  261|Drosophila melanogaster CG6629-PA
           protein.
          Length = 261

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 2/142 (1%)
 Frame = -3

Query: 632 PXITF--VKFEPPKXXHXDVXDXXLNXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAX 459
           P +T   + F  P     D  +  L   L PHL+     L          +G +L     
Sbjct: 58  PPVTLKVIPFRMPPDLPYDDRNMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVW 117

Query: 458 ALGIGXXXSPNDXXXYIXXXXGXXFXPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGX 279
            +GI       D   +I            + +AKV +  P  Y    G RHL W   +  
Sbjct: 118 FVGISGLCLQGDMEGFIKKVEKCDCH-GMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFL 176

Query: 278 XXXEXXFTGYAXLGXAXAITLF 213
              E   TGY  +    A++ F
Sbjct: 177 TIPEIYATGYVAVALTIALSAF 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,011,618
Number of Sequences: 53049
Number of extensions: 69307
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4423507848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)