Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P18
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    34   0.12 
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        34   0.12 

>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 1/117 (0%)
 Frame = -3

Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
           N P+ PHLT     L          +G ++       GIG    P D   ++        
Sbjct: 51  NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDFIRSWNL 110

Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXF-TGYAXLGXAXAITL 216
             A   + K  I  P  +    GIR L +D A+G       + +GY   G +  + L
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAILAL 167


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 1/117 (0%)
 Frame = -3

Query: 563 NXPLFPHLTXXSFXLXXXXFXXXXATGMMLTXXAXALGIGXXXSPNDXXXYIXXXXGXXF 384
           N P+ PHLT     L          +G ++       GIG    P D   ++        
Sbjct: 51  NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDFIRSWNL 110

Query: 383 XPAXLFLAKVXIXAPXGYXFGXGIRHLXWDXAQGXXXXEXXF-TGYAXLGXAXAITL 216
             A   + K  I  P  +    GIR L +D A+G       + +GY   G +  + L
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAILAL 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,606,882
Number of Sequences: 27780
Number of extensions: 36107
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)