Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P17
(1055 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.004
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.039
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 1.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 6.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -1
Query: 734 PPPPPPPXG----GXXPPPPXPXXGGGGG 660
PPPPPPP G G PPPP P GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 36.3 bits (80), Expect = 0.007
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 746 GXXXPPPPPPPXGGXXPPPPXP 681
G PPPPPP G PPPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780
Score = 35.9 bits (79), Expect = 0.010
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = -1
Query: 734 PPPPPPPX----GGXXPPPPXPXXGGGGGXF 654
PPPPPPP G PPPP P GG +
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Score = 35.1 bits (77), Expect = 0.017
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 731 PPPPPPXGGXXPPPPXPXXGGGG 663
PPP P GG PPPP P G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774
Score = 33.5 bits (73), Expect = 0.051
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 734 PPPPPPPXGGXXPPPPXPXXGGGGG 660
P PPP P G PPPP P G G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 33.5 bits (73), Expect = 0.051
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 294 GGXPPXPXXXPLGGEXSPXPPXTPPXXXGGXSR 196
GG PP P + G P PP PP G SR
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 661 PPPPPXXGXGGGGXXPP 711
PPPPP G G G PP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Frame = -1
Query: 734 PPPPPP----PXGGXXP---PPPXPXXGG 669
PPPPPP P P PPP P GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG 760
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 661 PPPPPXXGXGGGGXXPPXGGGGGGGXXXP 747
P PPP GG PP G G G P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.039
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -1
Query: 734 PPPPPPPXGGXXP--PPPXPXXG 672
PPPPPPP G P PPP P G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 290 GGPPXPXPXPXGXRXPRPPXXPP 222
G PP P P P +PP PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect(2) = 1.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 731 PPPPPPXGGXXPPPPXPXXGGGGGXF 654
P PPP PPPP P GG F
Sbjct: 942 PAFPPP-----PPPPPPLVSAAGGKF 962
Score = 21.0 bits (42), Expect(2) = 1.9
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 734 PPPPPP 717
PPPPPP
Sbjct: 907 PPPPPP 912
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 682 GXGGGGXXPPXGGGGGGG 735
G GGG PP G GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGG 209
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Frame = -1
Query: 746 GXXXPPPPPP---PXGGXXPPP 690
G PPPPPP P G PPP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 734 PPPPPPPXGGXXPPPPXPXXG 672
PPPPPPP P P G
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQG 357
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 655 KXPPPPPXXGXGGGGXXPPXGGGGGGGXXXP 747
K PPPPP G PP G G P
Sbjct: 309 KRPPPPPPPSRRNRG-KPPIGNGSSNSSLPP 338
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 10/28 (35%)
Frame = -1
Query: 734 PPPPP----------PPXGGXXPPPPXP 681
PPPPP PP G PPPP P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 734 PPPPPPPXGGXXPPPPXPXXGG 669
P PPPPP PP P G
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAG 1726
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 731 PPPPPPXGGXXPPPPXPXXGGG 666
P PPPP PPP P G
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAG 1726
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect(2) = 6.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 734 PPPPPPP 714
PPPPPPP
Sbjct: 191 PPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 6.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 734 PPPPPPP 714
PPPPPPP
Sbjct: 238 PPPPPPP 244
Score = 20.6 bits (41), Expect(2) = 6.8
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -1
Query: 731 PPPPPPXGGXXPP 693
P PPPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 20.6 bits (41), Expect(2) = 6.8
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = -1
Query: 728 PPPPPXGGXXPPPP 687
PPPP P PP
Sbjct: 273 PPPPATPSQPPRPP 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,040
Number of Sequences: 5004
Number of extensions: 17883
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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