Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P17
         (1055 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.65 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.65
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734  PPPPPPPXGG 705
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 734  PPPPPPP 714
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -1

Query: 287 GPPXPXPXPXGXRXPRPPXXPPXXXXGGXPXGPXG 183
           G P P P P           PP    G  P GP G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = -1

Query: 290 GGPPXPXPXPXGXRXPRPPXXPPXXXXGGXPXGP 189
           G  P P   P   +   PP        GG P  P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 734 PPPPPPPXGG 705
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 734 PPPPPPPXGGXXP 696
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 746  GXXXPPPPPP 717
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,719
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35186292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)