Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P15
         (942 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3HTL0 Cluster: Pherophorin-V1 protein precursor; n=1; ...    35   3.4  
UniRef50_Q64467 Cluster: Glyceraldehyde-3-phosphate dehydrogenas...    34   6.0  

>UniRef50_Q3HTL0 Cluster: Pherophorin-V1 protein precursor; n=1;
           Volvox carteri f. nagariensis|Rep: Pherophorin-V1
           protein precursor - Volvox carteri f. nagariensis
          Length = 590

 Score = 34.7 bits (76), Expect = 3.4
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPPF 859
           P  PPPP       P   PP  PP  P S+  PPF
Sbjct: 240 PPPPPPPPPPSPPPPPSPPPPSPPLPPPSIPSPPF 274


>UniRef50_Q64467 Cluster: Glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific; n=287; cellular organisms|Rep:
           Glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific - Mus musculus (Mouse)
          Length = 440

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPPFQK 865
           P  PPPP+ +  K     PP  PP  P     PP QK
Sbjct: 67  PPPPPPPQIEPDKFEEAPPPPPPPPPPPPPPPPPLQK 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 397,141,577
Number of Sequences: 1657284
Number of extensions: 5013002
Number of successful extensions: 21673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19681
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86549281324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)