Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P15
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 755  PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
            P   PP + +    P+ S P  PP  P+SV  PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPP-PMSVPPPP 1718


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 508 PKXXPPXPGGGGXFXXKKTPXPPPPXRXKKK 416
           P   PP P   G     + P PPPP   KK+
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -3

Query: 514 GXPKXXPPXPGGGGXFXXKKTPXPPPPXRXKKK 416
           G P   PP PG    F     P PPPP    KK
Sbjct: 7   GNPPPPPPPPG----FEPPSQPPPPPPPGYVKK 35



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGP 835
           P  PPPP       P F PP  PP  P
Sbjct: 6   PGNPPPPPPP----PGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 514 GXPKXXPPXPGGGGXFXXKKTPXPPPP 434
           G P   PP PG  G       P PPPP
Sbjct: 759 GGPPPPPPPPGVAG--AGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,690
Number of Sequences: 5004
Number of extensions: 11440
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)