Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P15
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 32 0.76
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.76
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.1
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 29 5.4
06_03_1172 - 28147957-28148274,28149362-28149877 29 5.4
06_03_0683 - 23490215-23490997 29 5.4
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 5.4
01_01_0070 - 542603-542686,542803-543441 29 5.4
07_01_0080 + 587674-588510 29 7.1
04_01_0034 - 401208-402923 28 9.4
01_01_0083 + 631196-631675 28 9.4
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.9 bits (69), Expect = 0.76
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
P PPPP+ + + P PP P P S+ PP
Sbjct: 123 PPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPP 156
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
P PPPP K PR P P P + PP
Sbjct: 244 PQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPPP 277
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 0.76
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGP 835
P PPPP K P FSPP PP P
Sbjct: 546 PPPPPPPPPSGNK-PAFSPPPPPPPPP 571
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGP 835
P PPPP KK P +PP PP P
Sbjct: 748 PAPPPPPLMTGKKAP--APPPPPPQAP 772
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 761 GPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPPFQK 865
GPPPP + PP P GP + PPF+K
Sbjct: 369 GPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKK 403
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 764 PPPPKXKXKK*P-RFSPPXXPPXGPLSVXXPP 856
PPPPK P + PP PP GP PP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 767 PPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
PPP + PR +PP PP P + PP
Sbjct: 244 PPPPGQGPVLPRDAPPMPPPPSPPNPGAPP 273
>06_03_1172 - 28147957-28148274,28149362-28149877
Length = 277
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 532 FXGXGXGXPKXXPPXPGGGGXFXXKKTPXPPPP 434
+ G G G P PP P F T PPPP
Sbjct: 3 YSGAGGGAPPPPPPSPPSVYPFLPPATFIPPPP 35
>06_03_0683 - 23490215-23490997
Length = 260
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 764 PPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
PPPP + P P PP P++ PP
Sbjct: 7 PPPPAKAPEAPPETKPKISPPAKPIAAAPPP 37
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 764 PPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
PPP + + PR PP PP P PP
Sbjct: 39 PPPARHRAPSPPRPPPPPPPPTQPAPPPPPP 69
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +2
Query: 755 PXGPPPPKXKXKK*PRFSPP--XXPPXGPLSVXXPP 856
P PPPP K P +PP PP P V PP
Sbjct: 79 PVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPP 114
>07_01_0080 + 587674-588510
Length = 278
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 496 PPXPGGGGXFXXKKTPXPPPP 434
PP GG G F P PPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPP 99
>04_01_0034 - 401208-402923
Length = 571
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGP 835
P PPPP + + P PP PP P
Sbjct: 305 PAPPPPPPQQQRAKPSRPPPPPPPLDP 331
>01_01_0083 + 631196-631675
Length = 159
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 526 GXGXGXPKXXPPXPGGGGXFXXKKTPXPPPP 434
G G G P GGGG P PPPP
Sbjct: 82 GGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,242
Number of Sequences: 37544
Number of extensions: 209654
Number of successful extensions: 1234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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