Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P15
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    29   3.6  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   4.8  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   4.8  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   8.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   8.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   8.4  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
           P  PPPP+      PR  PP  PP  P S    P
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRP 171


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 755 PXGPPPPKXKXKK*PRFSPPXXPPXGPLSVXXPPFQK 865
           P GPPPP  + +  P F PP      P     PP+ +
Sbjct: 37  PWGPPPPWHRNRGPPPFGPPPPWDRPPPPWRRPPWHR 73


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 526 GXGXGXPKXXPPXPGGGGXFXXKKTPXPPPP 434
           G G   P   PP PGG G F     P PP P
Sbjct: 654 GGGSSMPMPVPP-PGGLGGFMPPPPPPPPMP 683


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 526 GXGXGXPKXXPPXPGGGGXFXXKKTPXPPPP 434
           G G   P   PP PGG G F     P PP P
Sbjct: 654 GGGSSMPMPVPP-PGGLGGFMPPPPPPPPMP 683


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 764 PPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
           PPPP+ K +   R  P   PP G      PP
Sbjct: 330 PPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 360


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 764 PPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
           PPPP+ K +   R  P   PP G      PP
Sbjct: 351 PPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 381


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 764 PPPPKXKXKK*PRFSPPXXPPXGPLSVXXPP 856
           PPPP+ K +   R  P   PP G      PP
Sbjct: 336 PPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,994,037
Number of Sequences: 27780
Number of extensions: 141184
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)