Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P13
         (1144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   6.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +3

Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
           P + PP  P    +APP   S P   P   G     P P       P   P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/69 (27%), Positives = 22/69 (31%)
 Frame = +2

Query: 209 PRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPPPX 388
           P  G G  +   P PP   P     A    P    P+     PP      P TG  PPP 
Sbjct: 325 PPIGNGSSNSSLPPPP---PPPRSNAAGSIPLP--PQGRSAPPPPPPRSAPSTGRQPPPL 379

Query: 389 RQAXRXPRP 415
             +     P
Sbjct: 380 SSSRAVSNP 388


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +3

Query: 771  HPXTXPPPXPRXXQSAPPXEASGPXXXP---RXPGPRXGXPQPGXDXGXSPXARP 926
            HP + PP  P   QSA P + S P   P     P P    P P       P   P
Sbjct: 1685 HPVSTPPVRP---QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
 Frame = +2

Query: 767  APPXHXPPXXP-AXXPERAPXRSXRPXXXTAXPGPXXRPAPAXGGXXXLPPREAXPXEXX 943
            AP  H P   P A     AP +   P   T  P P   PAP       LPP  A P    
Sbjct: 1438 APSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAP-PAPVSQLPP--AVP--NV 1492

Query: 944  TXXRXXSXXAXQPPRRDATAT 1006
                     A QPP   A AT
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPAT 1513


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
 Frame = +3

Query: 774  PXTXPP-PXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
            P T PP P P      P   +  P   P  P P    P      G  P   P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
 Frame = +3

Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXP----QPGXDXGXSPXARP 926
           P    P  P    S PP    G    P  P P  G P     PG     +P   P
Sbjct: 507 PIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAP 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.139    0.488 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,657
Number of Sequences: 5004
Number of extensions: 11886
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)