Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P13
(1144 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.38
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.38
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.38
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 33 0.50
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 32 0.66
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 32 0.87
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.87
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.87
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 32 0.87
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 32 0.87
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 31 1.2
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 31 1.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 2.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 3.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 3.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 4.6
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 29 4.6
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 6.1
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 6.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 6.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 6.1
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.1
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 6.1
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 8.1
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 29 8.1
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 8.1
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 8.1
AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen prot... 29 8.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.38
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +2
Query: 203 PXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPP 382
P P P G P P P + PR PP P TG PP
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
Query: 383 PXRQAXRXPRP 415
P QA P P
Sbjct: 315 P--QAGGSPPP 323
Score = 32.3 bits (70), Expect = 0.66
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQXRXXP 947
P PP PR PP G P P+ G P G SP P Q R P
Sbjct: 284 PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTG-SPPPPPRQKRQAP 340
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/65 (26%), Positives = 22/65 (33%)
Frame = +1
Query: 166 GNXQAGXXXXXXPPPPXRXRXPLXTXXXPPXXXASXAXPGXXXNPRXXTPARAXXXPAXX 345
G QA PPPP + PL PP A+ + P P + P
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Query: 346 PAPTP 360
+P P
Sbjct: 287 GSPPP 291
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +2
Query: 755 PXXDAPPXHXPPXXPAXXPERAPXRSXRPXXXTA--XPGPXXRPAPAXGGXXXLPPREAX 928
P PP PP + P P P T P P P P G PPR
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 929 P 931
P
Sbjct: 297 P 297
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXA 920
P PPP P PP S P P P G P G P A
Sbjct: 276 PTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXP--RXPGPRXGXPQPGXDXGXSP 914
P PP PR PP S P P PR G P P SP
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 307
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSP 914
P T PP P S PP A P P G P G SP
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXP----RXPGPRXGXPQP 890
P PP P + +PP SG P P PR G P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 274
Score = 28.7 bits (61), Expect = 8.1
Identities = 21/93 (22%), Positives = 24/93 (25%)
Frame = +2
Query: 203 PXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPP 382
P PR G P PP + +P P PP P G +PP
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP--PRGSPPTGSLPPPQAGGSPP 322
Query: 383 PXRQAXRXPRPXXXXXXXXXXXXXXRPXPXXPP 481
P P P P PP
Sbjct: 323 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 355
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.38
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +2
Query: 203 PXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPP 382
P P P G P P P + PR PP P TG PP
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
Query: 383 PXRQAXRXPRP 415
P QA P P
Sbjct: 336 P--QAGGSPPP 344
Score = 32.3 bits (70), Expect = 0.66
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQXRXXP 947
P PP PR PP G P P+ G P G SP P Q R P
Sbjct: 305 PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTG-SPPPPPRQKRQAP 361
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/65 (26%), Positives = 22/65 (33%)
Frame = +1
Query: 166 GNXQAGXXXXXXPPPPXRXRXPLXTXXXPPXXXASXAXPGXXXNPRXXTPARAXXXPAXX 345
G QA PPPP + PL PP A+ + P P + P
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Query: 346 PAPTP 360
+P P
Sbjct: 308 GSPPP 312
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +2
Query: 755 PXXDAPPXHXPPXXPAXXPERAPXRSXRPXXXTA--XPGPXXRPAPAXGGXXXLPPREAX 928
P PP PP + P P P T P P P P G PPR
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 929 P 931
P
Sbjct: 318 P 318
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXA 920
P PPP P PP S P P P G P G P A
Sbjct: 297 PTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXP--RXPGPRXGXPQPGXDXGXSP 914
P PP PR PP S P P PR G P P SP
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 328
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSP 914
P T PP P S PP A P P G P G SP
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXP----RXPGPRXGXPQP 890
P PP P + +PP SG P P PR G P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 295
Score = 28.7 bits (61), Expect = 8.1
Identities = 21/93 (22%), Positives = 24/93 (25%)
Frame = +2
Query: 203 PXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPP 382
P PR G P PP + +P P PP P G +PP
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP--PRGSPPTGSLPPPQAGGSPP 343
Query: 383 PXRQAXRXPRPXXXXXXXXXXXXXXRPXPXXPP 481
P P P P PP
Sbjct: 344 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 376
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.38
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +2
Query: 203 PXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPP 382
P P P G P P P + PR PP P TG PP
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
Query: 383 PXRQAXRXPRP 415
P QA P P
Sbjct: 321 P--QAGGSPPP 329
Score = 32.3 bits (70), Expect = 0.66
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQXRXXP 947
P PP PR PP G P P+ G P G SP P Q R P
Sbjct: 290 PAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTG-SPPPPPRQKRQAP 346
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/65 (26%), Positives = 22/65 (33%)
Frame = +1
Query: 166 GNXQAGXXXXXXPPPPXRXRXPLXTXXXPPXXXASXAXPGXXXNPRXXTPARAXXXPAXX 345
G QA PPPP + PL PP A+ + P P + P
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Query: 346 PAPTP 360
+P P
Sbjct: 293 GSPPP 297
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +2
Query: 755 PXXDAPPXHXPPXXPAXXPERAPXRSXRPXXXTA--XPGPXXRPAPAXGGXXXLPPREAX 928
P PP PP + P P P T P P P P G PPR
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 929 P 931
P
Sbjct: 303 P 303
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXA 920
P PPP P PP S P P P G P G P A
Sbjct: 282 PTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXP--RXPGPRXGXPQPGXDXGXSP 914
P PP PR PP S P P PR G P P SP
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSP 313
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSP 914
P T PP P S PP A P P G P G SP
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXP----RXPGPRXGXPQP 890
P PP P + +PP SG P P PR G P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 280
Score = 28.7 bits (61), Expect = 8.1
Identities = 21/93 (22%), Positives = 24/93 (25%)
Frame = +2
Query: 203 PXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXAPP 382
P PR G P PP + +P P PP P G +PP
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP--PRGSPPTGSLPPPQAGGSPP 328
Query: 383 PXRQAXRXPRPXXXXXXXXXXXXXXRPXPXXPP 481
P P P P PP
Sbjct: 329 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 361
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 32.7 bits (71), Expect = 0.50
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +3
Query: 765 TXHPXTXPPPXPRXXQSAPPXEAS-GPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
T P PP P AP S GP P GP G QPG P P
Sbjct: 142 TPPPCPACPPGPPGAPGAPGKPGSEGPPGPPGHDGPNGGPGQPGQPGPHGPNGHP 196
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 32.3 bits (70), Expect = 0.66
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 786 PPPXPRXXQSAP--PXEASGPXXXPRXPGPRXGXPQPG 893
PPP P + P P A GP P GP G +PG
Sbjct: 144 PPPVPEVSEPVPEPPIPAPGPVAPPTPSGPLFGGVEPG 181
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.87
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 889 GWGXPXRGPGXRGXXXGPXASXGGALWXXRGXGGGXVXGW 770
GWG +G G +G GP GG W + GGG GW
Sbjct: 259 GWGQ--QGGGGQGGWGGPQQQQGGGGWGQQ--GGGGQGGW 294
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.9 bits (69), Expect = 0.87
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 889 GWGXPXRGPGXRGXXXGPXASXGGALWXXRGXGGGXVXGW 770
GWG +G G +G GP GG W + GGG GW
Sbjct: 222 GWGQ--QGGGGQGGWGGPQQQQGGGGWGQQ--GGGGQGGW 257
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.87
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 889 GWGXPXRGPGXRGXXXGPXASXGGALWXXRGXGGGXVXGW 770
GWG +G G +G GP GG W + GGG GW
Sbjct: 221 GWGQ--QGGGGQGGWGGPQQQQGGGGWGQQ--GGGGQGGW 256
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.9 bits (69), Expect = 0.87
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 889 GWGXPXRGPGXRGXXXGPXASXGGALWXXRGXGGGXVXGW 770
GWG +G G +G GP GG W + GGG GW
Sbjct: 260 GWGQ--QGGGGQGGWGGPQQQQGGGGWGQQ--GGGGQGGW 295
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.9 bits (69), Expect = 0.87
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 889 GWGXPXRGPGXRGXXXGPXASXGGALWXXRGXGGGXVXGW 770
GWG +G G +G GP GG W + GGG GW
Sbjct: 259 GWGQ--QGGGGQGGWGGPQQQQGGGGWGQQ--GGGGQGGW 294
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 771 HPXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQP 890
H PP P S PP + P PR PGP G P P
Sbjct: 1236 HHPMGPPAYPGTPGSFPPTTPTYPGMTPR-PGPNFGPPGP 1274
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 771 HPXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQP 890
H PP P S PP + P PR PGP G P P
Sbjct: 1236 HHPMGPPAYPGTPGSFPPTTPTYPGMTPR-PGPNFGPPGP 1274
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 771 HPXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQP 890
H PP P S PP + P PR PGP G P P
Sbjct: 1236 HHPMGPPAYPGTPGSFPPTTPTYPGMTPR-PGPNFGPPGP 1274
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Frame = +3
Query: 771 HPXTXPPPXP----RXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQXR 938
H + PPP P R S+PP P PR P PR P+ SP RP +
Sbjct: 118 HEASPPPPPPPRKSRAGGSSPPPPP--PPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP 175
Query: 939 XXP 947
P
Sbjct: 176 PSP 178
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 889 GWGXPXRGPGXRGXXX-GPXASXGGALWXXRGXGG 788
G G RG G RG GP S GG W G GG
Sbjct: 130 GGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGG 164
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P T PP P PP A GP P PGP P G P P
Sbjct: 141 PVTQPPCQP--CPGGPPGPA-GPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P T PP P PP A GP P PGP P G P P
Sbjct: 141 PVTQPPCQP--CPGGPPGPA-GPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPG---PRXGXPQPGXDXGXSPXARP 926
P T PP P PP + GP P PG P P PG G P P
Sbjct: 737 PITGGPPPPPPPGGLPPI-SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = +2
Query: 197 PXPXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXA 376
P P P PG G P PP P P P PP G
Sbjct: 726 PPPPPPPG-GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 377 PPP 385
PPP
Sbjct: 785 PPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPG---PRXGXPQPGXDXGXSPXARP 926
P T PP P PP + GP P PG P P PG G P P
Sbjct: 737 PITGGPPPPPPPGGLPPI-SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = +2
Query: 197 PXPXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXA 376
P P P PG G P PP P P P PP G
Sbjct: 726 PPPPPPPG-GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784
Query: 377 PPP 385
PPP
Sbjct: 785 PPP 787
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P T PP P PP A GP P PGP P G P P
Sbjct: 141 PVTQPPCQP--CPGGPPGPA-GPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P T PP P PP A GP P PGP P G P P
Sbjct: 141 PVTQPPCQP--CPGGPPGPA-GPAGPPGPPGPDGNPGSPAGPSGPGPAGPP 188
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPG---PRXGXPQPGXDXGXSPXARP 926
P T PP P PP + GP P PG P P PG G P P
Sbjct: 320 PITGGPPPPPPPGGLPPI-SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = +2
Query: 197 PXPXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXA 376
P P P PG G P PP P P P PP G
Sbjct: 309 PPPPPPPG-GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367
Query: 377 PPP 385
PPP
Sbjct: 368 PPP 370
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXA 920
P + PP P+ PP GP + PGP G P G P A
Sbjct: 702 PTSVQPPQPQQPPQGPP----GPPGPQQHPGPYPGYPGYGPPGAMRPPA 746
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPG 893
P PPP P+ APP P P GP P PG
Sbjct: 561 PPPPPPPLPQNLSGAPPPP---PPPPPMLGGPPPPPPPPG 597
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 4.6
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -1
Query: 892 PGWGXPXRGPGXRGXXXGPXA-SXGGALWXXRGXGGGXVXG 773
PGWG G G G G + GG W G GG G
Sbjct: 53 PGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGG 93
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +2
Query: 755 PXXDAPPXHXPPXX-PAXXPERAPXRSXRPXXXTAXPGPXXRPAPAXGGXXXLPPREAXP 931
P APP PP PA P+ + R P PG P P G PP A P
Sbjct: 172 PNGQAPPPVYPPFGQPA--PQMSGQRMPYPYPPQGMPGYPGGPPPPPHGYEGYPPPGAQP 229
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P P P P + AP GP P PG R PG G P P
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPP-PPGMRPPPGAPGGGGGMYPPLIP 814
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P P P P + AP GP P PG R PG G P P
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPP-PPGMRPPPGAPGGGGGMYPPLIP 814
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXP---GPRXGXPQPG 893
P PP P PP G PR P GP G P PG
Sbjct: 161 PPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXP---GPRXGXPQPG 893
P PP P PP G PR P GP G P PG
Sbjct: 161 PPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQXRXXP 947
P PPP P+ AP A+ P P P P G P G P P P
Sbjct: 609 PPPPPPPPPQSFGMAPISSAAPP---PPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 663
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQXRXXP 947
P PPP P+ AP A+ P P P P G P G P P P
Sbjct: 435 PPPPPPPPPQSFGMAPISSAAPP---PPPPPPPMGLPAVGAGAPPPPPPPPPSGAGGP 489
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 6.1
Identities = 19/63 (30%), Positives = 22/63 (34%)
Frame = +2
Query: 197 PXPXPRPGXGXPSXXXPAPPXXXPXAXXXAXXXTPAXXRPRXXXXXPPXHXXQXPXTGXA 376
P P P P P+ PAPP P PA + + PP H P
Sbjct: 97 PPPAPYPQHAVPA---PAPP---PAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPP 150
Query: 377 PPP 385
PPP
Sbjct: 151 PPP 153
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P P P P + AP GP P PG R PG G P P
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPP-PPGMRPPPGAPGGGGGMYPPLIP 814
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
P P P P + AP GP P PG R PG G P P
Sbjct: 765 PVPRPAPAPPGGRQAPMPPRGGPGAPP-PPGMRPPPGAPGGGGGMYPPLIP 814
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 8.1
Identities = 17/64 (26%), Positives = 18/64 (28%)
Frame = +1
Query: 169 NXQAGXXXXXXPPPPXRXRXPLXTXXXPPXXXASXAXPGXXXNPRXXTPARAXXXPAXXP 348
N A PPPP P T PP P P T + A P
Sbjct: 164 NTTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVP 223
Query: 349 APTP 360
P P
Sbjct: 224 KPAP 227
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical
protein ZC518.2 protein.
Length = 984
Score = 28.7 bits (61), Expect = 8.1
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +1
Query: 202 PPPPXRXRXPLXTXXXPPXXXASXAXPGXXXNPRXXTPARAXXXPAXXPAPTP 360
PPPP R P PP S A P AR PA P P P
Sbjct: 123 PPPPAVSRPP--AFPTPPPSVGSAAPSIQPPIPSALASARPAPFPAAQPPPAP 173
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +3
Query: 774 PXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQ 932
P PP P P +GP P PG + PG G P P Q
Sbjct: 233 PGPQGPPGPPGKDGQPGK--AGPPGLPGDPGEKGSDGLPGPHGGTGPRGPPGQ 283
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +3
Query: 765 TXHPXTXPPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARP 926
T P + PP P APP P P G P P G P P
Sbjct: 143 TGAPPSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGP 196
>AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen protein
55 protein.
Length = 208
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +3
Query: 786 PPPXPRXXQSAPPXEASGPXXXPRXPGPRXGXPQPGXDXGXSPXARPXQ 932
PP P E SG PR GP G QP G P Q
Sbjct: 109 PPGQPGAQGEQGHVEVSGQPGAPRPQGPAGGPGQPVQSGGSGASGAPGQ 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.139 0.488
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,116,227
Number of Sequences: 27780
Number of extensions: 151047
Number of successful extensions: 1371
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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