Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P12
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 2.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.6
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 3.6
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 6.2
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 6.2
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 6.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.2
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 28.3 bits (60), Expect = 1.5
Identities = 31/134 (23%), Positives = 56/134 (41%)
Frame = +1
Query: 109 EQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKR 288
+Q+++ S +P A+S+ IA +E A+ + + SS+ + SG
Sbjct: 534 QQEIQPSSSVPEAASNEIAEKEPA-----VTAIESITERKEEAPVISSSEKIESG----- 583
Query: 289 KTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGK 468
T+++ + + D LER QD+ + YSSE S S+D+ K
Sbjct: 584 -TSISTSDTKGGLANFENDSLEELERLIQQN-NAEQDEPSYKFHKYEYSSEESGSEDEFK 641
Query: 469 IQHQVDEEALSNED 510
+ +SN+D
Sbjct: 642 SEKDTKGYVISNDD 655
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 184 EELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQ 312
E L +RAL S L + ++A S+++ G +K +++N+N+
Sbjct: 824 ENLQSRALELESALEQSVSDAKYSKAIMQSGLSKLLSSINENK 866
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 124 ESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN 303
ES PP SSSS + + LP R L + ++LS Q GS S R+++ +
Sbjct: 417 ESPPPPPISSSSTTPRPDDKPSLPPRGL-------SEDNDSLSLQKTGS--SDTRRSSFS 467
Query: 304 KNQIPKTNV 330
+IP +++
Sbjct: 468 TLKIPDSDI 476
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +1
Query: 91 MSQIAEEQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGS 270
+ IA++ K E +D L P S+ A EKP + L+ ++ A+
Sbjct: 67 LKNIAKKNKRERNDKLIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSY 126
Query: 271 GGSAKRKTAL 300
+ K+K +L
Sbjct: 127 AETPKKKHSL 136
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +1
Query: 136 LPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQI 315
+ P+SSSS AA + +L +TLT + +A+SS + S+ ++++ +
Sbjct: 108 IDPSSSSSSAASSTT-STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSF 166
Query: 316 PKTNVHSGGDGCLLLERTTLSGIP 387
T++ S G +L T S +P
Sbjct: 167 --TSLSSSGFSTVLSSTNTTSALP 188
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 433 SSEHSMSQDQGKIQHQVDEE 492
S EH+ S D G QH +D+E
Sbjct: 46 SKEHNSSPDDGPWQHDLDQE 65
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 436 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 260
W M + +E + LE+F LI ++ P QN W+ YL L + H +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 217 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 324
STL +++ S S+G G S + + N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,854
Number of Sequences: 5004
Number of extensions: 55594
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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