Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P12
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0319 - 27872601-27874457 30 2.1
02_02_0340 + 9135846-9138377 30 2.1
11_04_0216 - 14954047-14956098 30 2.8
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 29 3.8
05_03_0459 - 14284513-14286336 29 3.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.8
02_02_0280 - 8515894-8517309 29 3.8
06_03_1157 - 28074675-28074710,28075318-28075514,28075676-280758... 29 5.0
06_03_0904 + 25832026-25832643 29 6.6
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 29 6.6
09_04_0362 - 16953108-16953155,16953478-16953562,16953626-169537... 28 8.7
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 28 8.7
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 28 8.7
>02_05_0319 - 27872601-27874457
Length = 618
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 154 SSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVH 333
+S+ A P LPT A+ + L R TN+ SS + S S+ +A + Q+
Sbjct: 204 NSVTAASSPSLPLPT-AVNSTALLARSPTNSSSSTASSSASSSPPISAASSRQLLSEAAA 262
Query: 334 SGGDGCLLLERTTLSGIPL 390
+ DG + LS + L
Sbjct: 263 AVADGNHTAAASLLSALKL 281
>02_02_0340 + 9135846-9138377
Length = 843
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/108 (23%), Positives = 45/108 (41%)
Frame = +1
Query: 76 HIADRMSQIAEEQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSS 255
H+++ + E++ S PP SS+ + RE++ + L T+ +T + L
Sbjct: 187 HVSNLLKITQPEERRVLSLKRPPTSSTITQNKLYGREDIFNQTLDDMCTIRSETLSVL-- 244
Query: 256 QSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQD 399
VG GG K A + +T H G+ + T + L Q+
Sbjct: 245 PIVGPGGIGKTTFAQHLYNHKRTEAHFSGNKTWVCVSTNFDVVRLTQE 292
>11_04_0216 - 14954047-14956098
Length = 683
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 109 EQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQS---VGSGGS 279
E +L+ES A QE PRE+ LRP +++ R+ + SS+ VG G
Sbjct: 480 EMRLQESHDDQEEEFKDAADQESPRED----PLRPSTSIARRVHSRTSSEHLLVVGEGSP 535
Query: 280 AKRK 291
K K
Sbjct: 536 RKEK 539
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 82 ADRMSQIAEEQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQS 261
AD+ + +A Q+ E+SD + SS+ + P P R LR R + + A+ S S
Sbjct: 796 ADKENGLASSQQSEDSDEIEATSSNDSTKKSSP----PWRKLRHRKAIYQDKDTAMPSNS 851
>05_03_0459 - 14284513-14286336
Length = 607
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +1
Query: 211 PRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPL 390
PRS+ +R +++ SS S GSG S+ + + SG C ++ SG
Sbjct: 266 PRSSSSRSDSSSSSSSSNGSGSSSSSSSGAS----------SGSSSC-AGSSSSSSGSDT 314
Query: 391 IQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEE--ALSNEDVEPAPVYDL 537
D + RPD + + ++ + ++H+V E+ L+ E +P L
Sbjct: 315 DADADSASNRPDTTTDHPTEAEVKPMVEHEVMEQDKKLTTERAAASPASQL 365
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 139 PPASSSSIAAQEKPREELPTRALRPRSTLTRKTTN 243
PP+SSSS A+ E P R+ RP + T TT+
Sbjct: 680 PPSSSSSSPARSSGSTEQPHRSKRPWAETTTTTTS 714
>02_02_0280 - 8515894-8517309
Length = 471
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/89 (22%), Positives = 39/89 (43%)
Frame = +1
Query: 82 ADRMSQIAEEQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQS 261
AD+ +A + K SD + + A + ++ + A + + +KT++ ++
Sbjct: 338 ADKAGDMAGQTKDTTSDTTGGMAHKAGAMAAQTKDTVKDAA----AAMAQKTSDTIAQAG 393
Query: 262 VGSGGSAKRKTALNKNQIPKTNVHSGGDG 348
G+G + R KN T + SGG G
Sbjct: 394 HGAGEAKNRAAESGKNSSATTTIGSGGGG 422
>06_03_1157 -
28074675-28074710,28075318-28075514,28075676-28075875,
28076190-28076287,28076798-28076854,28076952-28077010,
28077705-28077738,28077840-28077890
Length = 243
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 127 SDGLPPASSS--SIAAQEKPRE--ELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKT 294
SD L P S S AA+E P E+ R TRK + ALS+ G G +R++
Sbjct: 114 SDTLKPCSKDQGSSAAKEDPYNAYEMSPSDQRQNHETTRKRSVALSTSEEGRNGKKRRES 173
Query: 295 ALNKN 309
N++
Sbjct: 174 YDNRD 178
>06_03_0904 + 25832026-25832643
Length = 205
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 91 MSQIAEEQKLEESDGLPPASSSSI-AAQEKPR 183
M Q+A++ LE S GLP A++ +I AA+EK +
Sbjct: 156 MQQVADDYGLEVSVGLPQAAAHAIPAAKEKEK 187
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 28.7 bits (61), Expect = 6.6
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +1
Query: 94 SQIAEEQKLEESDGLPPASS-SSIAAQEKPREEL-PTRALRPRSTLTRKTTNALSSQSVG 267
SQ SDG PA S S + Q R L PT+ PR L + SS S+G
Sbjct: 297 SQTRSSSTDSASDGRYPADSLGSNSVQSVRRRNLSPTKKSPPREALHNVSNRRTSSSSIG 356
Query: 268 ---SGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQDDN 405
+ ++ + KN K NV D + T++ L++D N
Sbjct: 357 NKKNSPPSRHNSGQAKNFECKVNVTDAPDATPI---KTVTEEKLLKDGN 402
>09_04_0362 -
16953108-16953155,16953478-16953562,16953626-16953702,
16954601-16954641,16955140-16955644,16955897-16956316
Length = 391
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +1
Query: 94 SQIAEEQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSG 273
+QIA + L P+ ++S +A P P A S + TT LSS G+
Sbjct: 201 TQIAGTVTSQPQQSLIPSGATSSSAF--PSFSTPASAPSSSSLFSTPTTPTLSSNLFGTS 258
Query: 274 GSAKRKTALNKNQIP 318
GSA+ T P
Sbjct: 259 GSAQLSTPFGTVSTP 273
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 364 RTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 510
+T+L I + D D+ D +SE + +D + ++DE++LS+ED
Sbjct: 243 KTSLGQIAYSEWDEDE-IDEDPLNSEDEIDEDPLNSEDEIDEDSLSSED 290
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 115 KLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKR 288
K+E P ++ A Q + +++ T A PRS ++ + ++VG+GGS+ +
Sbjct: 348 KMEILPSHPMTQQNAAAQQMQQNKDVKTNASNPRSN-AKQDSGTGKGRAVGTGGSSTK 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,282,153
Number of Sequences: 37544
Number of extensions: 380239
Number of successful extensions: 1269
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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