Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P10
(1041 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 33 0.28
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.6
07_01_0479 + 3606663-3607448 30 3.5
05_01_0142 - 940421-940701,941262-941574 29 4.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.6
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 6.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 8.0
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 29 8.0
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 33.5 bits (73), Expect = 0.28
Identities = 21/64 (32%), Positives = 21/64 (32%)
Frame = -1
Query: 633 GXGGGXPPXXXPPPXXPXXXGGGXEXXXXXXGPPPXXXGXXGXPGGGGDQXKXXXYXKXR 454
G GGG PPP GG PPP G G GGG Q
Sbjct: 82 GGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGG--GGGWQQGGGGGGAYPT 139
Query: 453 PXPP 442
P PP
Sbjct: 140 PPPP 143
Score = 32.3 bits (70), Expect = 0.65
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 490 PPPPRXPXXPPXXRGGAXXXXXXFXPPPXXXGXXGGXXXXXGG--XPPPPG 636
PPPP P GG PPP G GG GG PPP G
Sbjct: 70 PPPPSYPSG--GGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTG 118
Score = 29.1 bits (62), Expect = 6.1
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Frame = -1
Query: 612 PXXXPPPXXPXXXGGGXEXXXXXX-GPPPXXXGXXG--XPGGGG 490
P PPP P GGG PPP G G GGGG
Sbjct: 67 PQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGG 110
Score = 26.2 bits (55), Expect(2) = 4.5
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 362 PPXFPX*XGGGXXGVFXPXXXXPPXXRGGXG 454
PP +P GGG G PP GG G
Sbjct: 72 PPSYPSGGGGGGGGGTVMYTSPPPPYSGGGG 102
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 14/47 (29%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Frame = +2
Query: 530 GGGPXXXXXXSXPPPKXXGXXG------GGXXXGGXPPPXPXXKXXP 652
GG PPP G G GG G P P P P
Sbjct: 102 GGSSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLP 148
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +1
Query: 490 PPPPRXPXXPPXXRGGAXXXXXXFXPPPXXXGXXGGXXXXXGGXPPPP 633
PPPP PP G P P GG GG PPPP
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG---KKGGPPPPP 381
Score = 29.5 bits (63), Expect = 4.6
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 753 PPXXPPXKGPKPGXXPXGKXKEGXXGXPXXP 845
PP PP KGP P P K+G G P P
Sbjct: 353 PPPPPPPKGPSPPPPPPPGGKKG--GPPPPP 381
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +1
Query: 490 PP--PPRXPXXPPXXRGGAXXXXXXFXPPPXXXGXXGG-XXXXXGGXPPPP 633
PP PP P PP G PP G GG G PPPP
Sbjct: 190 PPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPP 240
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +3
Query: 711 GXPXXXXGXFQXGXPPXXPPXKGP-KPGXXPXGKXKEGXXGXPXXP 845
G P G F G PP PP P PG P G + G P P
Sbjct: 199 GGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPG-MRPGMPPPPFRP 243
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +1
Query: 490 PPPPRXPXXPPXXRGGAXXXXXXFXPPPXXXGXXGGXXXXXGGXPPPPGXEXH 648
PPPP PP GA PPP GG PPP G H
Sbjct: 41 PPPPGAYPPPP----GAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQH 89
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 4.6
Identities = 25/95 (26%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Frame = -3
Query: 844 GXXGXPXXPSFXFPXGXXPGXGPFXGGXXGGXPX*XXPXXXXGX--PXXFXGXRPPXXXX 671
G G P+ P G P G GG P P G P G P
Sbjct: 1129 GLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPP 1188
Query: 670 XXXXXXXXXFPXRXGGGXPPXXXAXPXVPPPFXGG 566
P G PP P PPP GG
Sbjct: 1189 PRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
Score = 28.7 bits (61), Expect = 8.0
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -1
Query: 633 GXGGGXPPXXXPPPXXPXXXGGGXEXXXXXXGPPPXXXGXXGXPGGGG 490
G GG P P P P GG PPP G PGG G
Sbjct: 1194 GVGGPPTPPGAPAPPMPPGVPGGPP-------PPPGGRGLPAPPGGRG 1234
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.5 bits (63), Expect = 4.6
Identities = 20/81 (24%), Positives = 21/81 (25%), Gaps = 1/81 (1%)
Frame = -1
Query: 600 PPPXXPXXXGGGXEXXXXXXGPPPXXXGXXG-XPGGGGDQXKXXXYXKXRPXPPRXXGGX 424
PPP P G G PPP P P PP
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAP 361
Query: 423 XXXGXKTPXXPPPX*XGKXGG 361
G PPP G+ GG
Sbjct: 362 RPPGPGPGPPPPPGAAGRGGG 382
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 6.1
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = -1
Query: 597 PPXXPXXXGGGXEXXXXXXG-PPPXXXGXXGXPGGGGDQXKXXXYXKXRPXPPRXXGGXX 421
PP P GGG G PPP G PGG G P GG
Sbjct: 338 PP--PSSYGGGPGSYPPSYGAPPPNPPYSGGAPGGQG---------SLPPSYDGGYGGRP 386
Query: 420 XXGXKTPXXPPPX*XGKXGG 361
G P PPP G GG
Sbjct: 387 MPGGGGPGAPPPYHGGGGGG 406
Score = 29.1 bits (62), Expect = 6.1
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -1
Query: 633 GXGGGXPPXXXPPPXXPXXXGGGXEXXXXXXGPPPXXXGXXG--XPGGGG 490
G G PP PP P GG PP G G PGGGG
Sbjct: 345 GGPGSYPPSYGAPPPNPPYSGGAPGGQGSL--PPSYDGGYGGRPMPGGGG 392
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 8.0
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +1
Query: 490 PPPPRXPXXPPXXRGGAXXXXXXFXPPPXXXGXXGGXXXXXGGXPPPP 633
PPPP P PP A PPP PPPP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPP 591
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 531 GGGPXXXXXXXPPPXXGGGTXGXAXQXGG 617
G GP PPP GGG G GG
Sbjct: 453 GSGPYPQQGRGPPPYPGGGMGGAGGPRGG 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,313
Number of Sequences: 37544
Number of extensions: 401188
Number of successful extensions: 1642
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3071102548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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