Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P08
         (866 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.2  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 641 PSLRSPVPTLPLTGYL 688
           PS+  P P LP TG+L
Sbjct: 155 PSIIDPGPALPPTGFL 170


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 614 DTRRFPLEAPSLRSPVPTLPLTGYLSAF 697
           D+RR PL     + P P  P+  Y  +F
Sbjct: 76  DSRRLPLRDAVEKRPPPDEPIDDYEPSF 103


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 395 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 505
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 590 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 624


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 395 CGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGT 505
           C  R QLT RR +  P        R C    +  PGT
Sbjct: 482 CRPREQLTWRRNFHGPHRLAARSRRCCYHAVA--PGT 516


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 641 PSLRSPVPTLPLTGYL-SAFLP 703
           PS+  P P LP  G+L + +LP
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLP 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,085
Number of Sequences: 336
Number of extensions: 3553
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)