Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P06
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   4.8  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   6.3  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   6.3  

>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 136 LPHSCF*SHIRRSFTLSIVIIYHSYVIDNFLIRF 237
           LPH+ F +HI   F +S + +  SY    +++ F
Sbjct: 2   LPHTAFSNHIHYHFIISFMKMNDSYTPYTYIVSF 35


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +3

Query: 447 DTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDTGAKCGR 626
           DT   K    L  +EH  +  E+Y EK  N++   +T I        K V+ +  AK G 
Sbjct: 115 DTFPAKAQKALTFLEHHLRDLEDYAEKSKNNVETLMTDI--------KDVV-EHAAKLGA 165

Query: 627 HYQFTDEECIVTLTHENASVSGKRYF 704
               T EE  V   +    + G R++
Sbjct: 166 QRLITLEELPVQWHNNPYIIRGYRFY 191


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 261 LKTAISYTQLLFA*KKMPSIAGKYQHYKNEDIDDY 365
           ++ A SY   L A +K+  I GKYQ  + ++ D+Y
Sbjct: 10  MEYASSYETWLEAAEKLDVIEGKYQWREQKESDEY 44


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 626 TSTFSACVRYNRFCLHFTIIGDCCDTFYNGIGH 528
           TS  + CV YN  C  F +     D  YN +G+
Sbjct: 239 TSGDTVCVAYNPLCEKFALGSTAQDGAYNRLGN 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,901
Number of Sequences: 5004
Number of extensions: 59522
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)