Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_P05
         (936 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         35   0.11 
08_01_0534 - 4635122-4635380,4635716-4635837                           32   0.75 
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634...    30   3.0  
04_04_0592 + 26477974-26479311                                         29   7.0  

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 55  SGSAAGLCQATRVQRDRPNMWLGSRGPGATAG 150
           +  AAG CQ  R +R    +WLGS G G T G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 57  GQRSGTVPGYPRAT-RPPQHV----AGVAWARCDGRRRPATSLGLWTGRATDVTR 206
           GQR G  P    +  R  Q V    +GV W  C GR    +++G WTG A + TR
Sbjct: 46  GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>05_05_0303 -
           23958989-23960563,23962628-23962864,23963250-23963449,
           23964088-23964250,23964348-23964554,23964667-23964798
          Length = 837

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 44  DFGTRAAQRDCARLPACNATAPTCGWGRVGPVRRPAASSDV 166
           D G+  +Q D  ++ + +  A TC WGR   VRR    SD+
Sbjct: 474 DRGSTDSQSDEMKVDSEDKPAGTCKWGRAFSVRRRKKLSDI 514


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 130 HATPATCWGGRVARG--*PGTVPLRCPSAKILRNSL*WK 20
           + TPA  W G V RG   PG++PL    + +LR +L +K
Sbjct: 228 NGTPAEAWLGAVQRGDVSPGSIPLGQNLSNLLRLALLYK 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,107,001
Number of Sequences: 37544
Number of extensions: 331601
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)