Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_P04
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 180 2e-46
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 139 4e-34
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 139 4e-34
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 139 4e-34
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 139 4e-34
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 85 9e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 2e-04
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.0
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 180 bits (438), Expect = 2e-46
Identities = 90/111 (81%), Positives = 95/111 (85%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 554 IQKESTLHLVXXXXXXXXIFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IQKESTLHLV IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 111
Score = 180 bits (438), Expect = 2e-46
Identities = 90/111 (81%), Positives = 95/111 (85%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 554 IQKESTLHLVXXXXXXXXIFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IQKESTLHLV IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 187
Score = 180 bits (438), Expect = 2e-46
Identities = 90/111 (81%), Positives = 95/111 (85%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 554 IQKESTLHLVXXXXXXXXIFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IQKESTLHLV IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 263
Score = 180 bits (438), Expect = 2e-46
Identities = 90/111 (81%), Positives = 95/111 (85%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 554 IQKESTLHLVXXXXXXXXIFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IQKESTLHLV IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 339
Score = 139 bits (337), Expect = 4e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 554 IQKESTLHLV 583
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 139 bits (337), Expect = 4e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 554 IQKESTLHLV 583
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 608 IFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 35
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 139 bits (337), Expect = 4e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 554 IQKESTLHLV 583
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 608 IFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 35
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 139 bits (337), Expect = 4e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 554 IQKESTLHLV 583
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 608 IFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 35
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 139 bits (337), Expect = 4e-34
Identities = 67/70 (95%), Positives = 69/70 (98%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 554 IQKESTLHLV 583
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2
Query: 608 IFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
IFVKTLTGK ITLEV+ SD I+NV + DKEG
Sbjct: 3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG 35
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 85.4 bits (202), Expect = 9e-18
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 554 IQKESTLHLV 583
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 608 IFVKTLTGKXITLEVKXSDXIENVXAXXXDKEG 706
I VKTLTGK I L++ +D + + +KEG
Sbjct: 3 IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEG 35
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 401 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 574
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 550
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 551 NIQKE 565
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 374 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 553
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 554 IQKESTLHLV 583
IQ ++HLV
Sbjct: 64 IQDGHSIHLV 73
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = -3
Query: 367 LEDTIISLCQLYVEQL*AQNTIT 299
+EDT++S+C++ +E ++N +T
Sbjct: 50 IEDTVLSICEVTLENKASENALT 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,434
Number of Sequences: 5004
Number of extensions: 52037
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -