Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O19
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    75   1e-14
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    73   4e-14
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.8  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.7  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   6.5  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   6.5  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   6.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   8.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/73 (46%), Positives = 53/73 (72%)
 Frame = +1

Query: 184 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 363
           V+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 364 VVQHHGQVIYTRA 402
           V QH  Q IYTRA
Sbjct: 72  VDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 33/72 (45%), Positives = 52/72 (72%)
 Frame = +1

Query: 184 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 363
           V+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 364 VVQHHGQVIYTR 399
           V QH  Q IYTR
Sbjct: 72  VDQHSKQAIYTR 83


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 239  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 141
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 113 KKHRXXRKDPVAAKPRRRSGPKEKFVTS*TTRC 211
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 347 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 183
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 182 FPLDHF 165
           +P+  F
Sbjct: 263 YPIITF 268


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 232 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILP 131
           +M  YQ TP     HE   WT SS  L  H + P
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTP 183


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 375 MLDYLFDETFFPKLDECSSR 316
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -3

Query: 434 IVYATGSSPLVARV*ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYC 255
           I+Y T ++P++  + +T   CW   L  P  L ++  L    P   + SD    ++    
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP--LCTIVTL----PVENHSSDAILTLLYNSV 313

Query: 254 GTSLYSFSYVGLSNNTWLFNLSRTF 180
             S +SF +    ++  LF  SR F
Sbjct: 314 KESYHSFKHAMSISSIRLFLFSRLF 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,389
Number of Sequences: 5004
Number of extensions: 35603
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)