Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O19
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   120   2e-27
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    28   8.2  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  120 bits (288), Expect = 2e-27
 Identities = 58/80 (72%), Positives = 66/80 (82%)
 Frame = +1

Query: 184 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 363
           VRDKLNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K 
Sbjct: 36  VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKC 95

Query: 364 VVQHHGQVIYTRATKGDDPV 423
           VV HHGQV+YTRATK  D +
Sbjct: 96  VVHHHGQVVYTRATKEADVI 115


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 184 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 315
           V  K  N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,916
Number of Sequences: 27780
Number of extensions: 212210
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)