Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_O18
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    29   3.4  
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    29   4.5  
Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical p...    28   7.9  

>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 289 TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCY---SHYT*TSRRYRCATT 438
           +STS  + +T   SS  S+ PD++S+  S     +   + YT   RR  CATT
Sbjct: 191 SSTSTLISSTAISSSCTSYIPDSSSSCASWAANGFCTNNFYTIAGRRAVCATT 243


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 537 LKLSPSCAHVQK--LSHLRKVLRVLPWILLA 623
           + +   C H Q   +SH+ +V  VLPWI+ A
Sbjct: 42  MPIEMDCPHCQNHIVSHIERVAGVLPWIIFA 72


>Z81513-11|CAB04184.2|  254|Caenorhabditis elegans Hypothetical
           protein F26D2.14 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 289 TSTSIWLGTTIQCSSSKSWCPDTNSTSGSRLTPCY---SHYT*TSRRYRCATT 438
           TS  I   TT   S+  S+ PD++S+  +     +   +HYT   R+  CATT
Sbjct: 198 TSARISSSTTSITSTCSSYNPDSSSSCAAWAANGFCTNTHYTVARRKATCATT 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,391
Number of Sequences: 27780
Number of extensions: 324791
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)